PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009775780.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 265aa MW: 31035.9 Da PI: 9.5471

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009775780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.3e-09	130	171	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e v+ +k++G++ Wk a ++g + + ++k+ w+ + XP_009775780.1 130 KWTEEEYEMVVKFHKEHGNN-WKVLADELG--KHRFHVKDTWRRL 171 8***************99.******9..6788899888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.3E-4	54	125	IPR001005	SANT/Myb domain
SMART	SM00717	0.016	127	174	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-8	127	171	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.49E-8	128	182	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.457	130	172	IPR017877	Myb-like domain
CDD	cd00167	0.00237	130	159	No hit	No description
Pfam	PF13921	1.9E-9	131	184	No hit	No description
PROSITE profile	PS50090	6.586	173	238	IPR017877	Myb-like domain
SMART	SM00717	5.5	177	240	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-5	177	238	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEEQSRTDTG NIRKRKKGSE DPTHEKRVRF SGHVQIFPSS GDPSHETEEE NLLRGKGFSK 60 LEDEIVKEAV HKYIDIHNLG EEGLQKILKS RSNPEVKGCW KEIGSALPYR PYTAVYYRAQ 120 VLFRRSETRK WTEEEYEMVV KFHKEHGNNW KVLADELGKH RFHVKDTWRR LKLANKKKGQ 180 WSQEXLFDLV NTHLKLKLSE EKKSKHGMLR DNIAWGAISG RLSTRTDATC CLKWYDQLTS 240 PMVAKGEWAD TDDYRLVDAL FELNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	16	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775780.1	0.0	PREDICTED: LOW QUALITY PROTEIN: myb domain-containing protein YDR026C-like
TrEMBL	A0A1U7WNE7	0.0	A0A1U7WNE7_NICSY; LOW QUALITY PROTEIN: myb domain-containing protein YDR026C-like
STRING	XP_009775780.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1029	14	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	6e-85	MYB_related family protein