PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009775739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 332aa MW: 38311.3 Da PI: 5.4376 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.8 | 3.6e-08 | 281 | 314 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +qV +WF N+R + XP_009775739.1 281 KWPYPTEEDKAKLVQETGLQLKQVNNWFINQRKR 314 569*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.3E-15 | 67 | 111 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.0E-15 | 69 | 110 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.4E-24 | 121 | 176 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-18 | 125 | 175 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.097 | 235 | 255 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0077 | 235 | 256 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 255 | 318 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-11 | 257 | 322 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 257 | 320 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.68E-10 | 258 | 318 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 262 | 318 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.8E-18 | 275 | 314 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAFQDHFSQE LALQQHQQQN VDDDVSDQSM SFSMKLSQQY RGERVDEVSN NNNNNNNNNN 60 NDSWENEKYK ADILNHHLCD QLLSAHVACL RIATPVDQLP RIDEQLTESQ NSVAKYYVVG 120 QSQRPIDDKD LDQFMTHYVL LLSSFKEQLQ QHVRVHAMEA VMACWEIDQS LQNLTGVGPG 180 EGTGATMSDD DDDQTESETN TNCYNGVLDV SDSTGFGPLV PTESERFLME RVRQELKQEF 240 KQGYKEKIVD IREEILRKRR AGKLPGDTTS ALKAWWKSHS KWPYPTEEDK AKLVQETGLQ 300 LKQVNNWFIN QRKRNWHTTP SSSSTQKSKR KR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 311 | 331 | RKRNWHTTPSSSSTQKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775739.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X2 | ||||
Swissprot | O22300 | 1e-155 | LET12_SOLLC; Homeobox protein knotted-1-like LET12 | ||||
TrEMBL | A0A1U7WM49 | 0.0 | A0A1U7WM49_NICSY; homeobox protein knotted-1-like LET12 isoform X2 | ||||
STRING | XP_009775738.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-144 | KNOTTED1-like homeobox gene 3 |