PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775738.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 343aa    MW: 39471.5 Da    PI: 5.4363
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.8e-082813142154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +qV +WF N+R +
  XP_009775738.1 281 KWPYPTEEDKAKLVQETGLQLKQVNNWFINQRKR 314
                     569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-1567111IPR005540KNOX1
PfamPF037901.1E-1569110IPR005540KNOX1
SMARTSM012565.4E-24121176IPR005541KNOX2
PfamPF037911.3E-18125175IPR005541KNOX2
PROSITE profilePS512139.097235255IPR005539ELK domain
SMARTSM011880.0077235256IPR005539ELK domain
PROSITE profilePS5007111.726255318IPR001356Homeobox domain
SuperFamilySSF466897.7E-16257320IPR009057Homeodomain-like
SMARTSM003899.1E-11257322IPR001356Homeobox domain
CDDcd000861.54E-10258318No hitNo description
Gene3DG3DSA:1.10.10.603.9E-25262318IPR009057Homeodomain-like
PfamPF059207.1E-18275314IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAFQDHFSQE LALQQHQQQN VDDDVSDQSM SFSMKLSQQY RGERVDEVSN NNNNNNNNNN  60
NDSWENEKYK ADILNHHLCD QLLSAHVACL RIATPVDQLP RIDEQLTESQ NSVAKYYVVG  120
QSQRPIDDKD LDQFMTHYVL LLSSFKEQLQ QHVRVHAMEA VMACWEIDQS LQNLTGVGPG  180
EGTGATMSDD DDDQTESETN TNCYNGVLDV SDSTGFGPLV PTESERFLME RVRQELKQEF  240
KQGYKEKIVD IREEILRKRR AGKLPGDTTS ALKAWWKSHS KWPYPTEEDK AKLVQETGLQ  300
LKQVNNWFIN QRKRNWHTTP SSSSTQKSKR KSAGEKSRND HFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775738.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-156KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1U7WAR80.0A0A1U7WAR8_NICSY; homeobox protein knotted-1-like LET12 isoform X1
STRINGXP_009775738.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-144KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]