PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775593.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 350aa    MW: 38733.8 Da    PI: 10.2756
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31278335359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  XP_009775593.1 278 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 335
                     99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.0E-18226274IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33264335IPR003657WRKY domain
PROSITE profilePS5081130.733271337IPR003657WRKY domain
SuperFamilySSF1182904.45E-27273335IPR003657WRKY domain
SMARTSM007741.2E-37276336IPR003657WRKY domain
PfamPF031063.2E-27278334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAVELMTSGY SRRDSFSTKM EENAVQEAAT AGLQSVEKLI RLLSQSHQNQ QQQQQKLDQN  60
PSVSADYTAV ADVAVNKFKK FISLLDKNRT GHARFRKGPI STPLPPPPKP QQQRLNQNSI  120
KNQNLQIEET EKPQINTPKI YCPTPIQRLP PLPHNHLQLV KNGSIERKES STTINFASAS  180
PANSFMSSLT GETESLQQSL SSGFQITNLS TVSSAGRPPL STSSFKRKCS SMDDTALKCN  240
SAGGSSGRCH CPKKRKSRVK RVVRVPAISM KMADIPPDDY SWRKYGQKPI KGSPHPRGYY  300
KCSSVRGCPA RKHVERALDD PTMLIVTYEG EHNHSHSITE SPAAHVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21264334271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415200.0AB041520.1 Nicotiana tabacum mRNA for WRKY transcription factor NtEIG-D48, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312390.10.0probable WRKY transcription factor 7
RefseqXP_009775593.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-104WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U7WAC70.0A0A1U7WAC7_NICSY; probable WRKY transcription factor 7
TrEMBLQ9FXS10.0Q9FXS1_TOBAC; WRKY transcription factor NtEIG-D48
STRINGXP_009775593.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-90WRKY DNA-binding protein 7