PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775526.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 551aa    MW: 60608.1 Da    PI: 6.6629
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30221278260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK v+g+ef+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k
  XP_009775526.1 221 EDGYNWRKYGQKLVRGNEFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 278
                     8****************************************.***************85 PP
2WRKY1054e-33396454159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+
  XP_009775526.1 396 VNDGHRWRKYGQKFVKGNPNPRSYYRCSIAGCPVKKHVERASHDPKMVITTYEGQHDHT 454
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.436215279IPR003657WRKY domain
SuperFamilySSF1182902.22E-24217278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-26217278IPR003657WRKY domain
SMARTSM007746.3E-34220278IPR003657WRKY domain
PfamPF031064.1E-23221277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-34382454IPR003657WRKY domain
SuperFamilySSF1182901.31E-28388455IPR003657WRKY domain
PROSITE profilePS5081133.66391456IPR003657WRKY domain
SMARTSM007742.6E-38396455IPR003657WRKY domain
PfamPF031062.5E-26397453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MGTPREEATN KVPSENLQPK PDTDPDPATN NPELKEKGSC ESISADVVSG ELQKRLSPAT  60
DAQASKSNQE ETTHPSTCQD VSNNVSQSNQ EDISLSKVQE YQSETVRQKQ GLKSEGDASG  120
CSHLLILPKD SDAKSCGSES GVIEKVVSPL SNKASNSSDQ IQSQTMEVVV SRSDQQLVTY  180
PARPEKTLDK LQPRRNPDTS GHGLPSDRGN TLFKLPEKPL EDGYNWRKYG QKLVRGNEFT  240
RSYYKCTYPN CLAKKQVERS HDGHITDVHY IGKHEHPKTP SGPQTPPGLV VPLQMRQPDI  300
PMLTASEEAE GEKSTVPGET CEPSKPSEAP LALDIVSPAM QVTPLKPHKL ENEVDKNRGP  360
DSKRQKKDIA KDDTPPIKSH SEPRHIVQTV SEVDIVNDGH RWRKYGQKFV KGNPNPRSYY  420
RCSIAGCPVK KHVERASHDP KMVITTYEGQ HDHTMSWFRT LSQITAAPDL SLTGVSGESR  480
LESGETKHVS QSGETKHIGE SKVESGENKH VGESKSESGE NKHVGESRIE SGESGENKHV  540
NIDMVVHIGA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-31211455275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0962980.0AF096298.1 Nicotiana tabacum DNA-binding protein 1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775524.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_016501938.10.0PREDICTED: probable WRKY transcription factor 20 isoform X3
TrEMBLA0A1S4CL390.0A0A1S4CL39_TOBAC; probable WRKY transcription factor 20 isoform X3
TrEMBLA0A1U7WLI90.0A0A1U7WLI9_NICSY; probable WRKY transcription factor 20 isoform X1
STRINGXP_009775524.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-70zinc-dependent activator protein-1