PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775434.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 274aa    MW: 31260.8 Da    PI: 6.1049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1781134356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  XP_009775434.1  81 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 134
                     4557899*********************************************99 PP
2HD-ZIP_I/II128.72.4e-4180171192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el+
  XP_009775434.1  80 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNKKLHSELQ 171
                     69***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-1878138IPR009057Homeodomain-like
SMARTSM003898.2E-1879140IPR001356Homeobox domain
PROSITE profilePS5007116.1880136IPR001356Homeobox domain
CDDcd000861.47E-1581137No hitNo description
PfamPF000467.6E-1581134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1883143IPR009057Homeodomain-like
PRINTSPR000311.2E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5116132IPR000047Helix-turn-helix motif
PfamPF021839.4E-15136174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAFAAPETNS VDFRNHEAAN DDLPSSFPSH VFPSSCPPHQ EFQGISPLLM RRAMSFDHNQ  60
ESRVEDDMSD DDGSSHLLGE KKRRLNLEQV KALERSFEMG NKLEPERKMQ LARALGLKPR  120
QIAIWFQNRR ARCKTKQLEK DYEILKRQCD KLKADNDALK TQNKKLHSEL QLLSLGNRES  180
AGGTPPMLFN LNKENEGCNW NNNGSGDENN STIDVNLGTT TRTSSTNSPL NNHDVFPTAY  240
KVDQTVNEEG FCNMFTNVED QTNFWPLPVQ QHFY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490250.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
SwissprotQ004662e-64HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1S4BN140.0A0A1S4BN14_TOBAC; homeobox-leucine zipper protein HAT7-like isoform X1
STRINGXP_009775432.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-56homeobox 3