PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775433.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33153 Da    PI: 5.8752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17101154356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  XP_009775433.1 101 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 154
                     4557899*********************************************99 PP
2HD-ZIP_I/II128.52.7e-41100191192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el 
  XP_009775433.1 100 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNKKLHSELL 191
                     69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1898158IPR009057Homeodomain-like
SMARTSM003898.2E-1899160IPR001356Homeobox domain
PROSITE profilePS5007116.18100156IPR001356Homeobox domain
PfamPF000468.4E-15101154IPR001356Homeobox domain
CDDcd000864.53E-16101157No hitNo description
Gene3DG3DSA:1.10.10.601.9E-18103163IPR009057Homeodomain-like
PRINTSPR000311.3E-5127136IPR000047Helix-turn-helix motif
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5136152IPR000047Helix-turn-helix motif
CDDcd146860.00872147190No hitNo description
PfamPF021831.9E-15156196IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTLIGLLCAY DNMLFSSTGT MAFAAPETNS VDFRNHEAAN DDLPSSFPSH VFPSSCPPHQ  60
EFQGISPLLM RRAMSFDHNQ ESRVEDDMSD DDGSSHLLGE KKRRLNLEQV KALERSFEMG  120
NKLEPERKMQ LARALGLKPR QIAIWFQNRR ARCKTKQLEK DYEILKRQCD KLKADNDALK  180
TQNKKLHSEL LSLGNRESAG GTPPMLFNLN KENEGCNWNN NGSGDENNST IDVNLGTTTR  240
TSSTNSPLNN HDVFPTAYKV DQTVNEEGFC NMFTNVEDQT NFWPLPVQQH FY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775433.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X2
SwissprotQ004662e-64HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1U7W9W40.0A0A1U7W9W4_NICSY; homeobox-leucine zipper protein HAT7-like isoform X2
STRINGXP_009775432.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-56homeobox 3