PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775432.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33394.3 Da    PI: 5.8752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775432.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.2e-17101154356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  XP_009775432.1 101 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 154
                     4557899*********************************************99 PP
2HD-ZIP_I/II128.52.8e-41100191192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el+
  XP_009775432.1 100 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNKKLHSELQ 191
                     69***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1898158IPR009057Homeodomain-like
SMARTSM003898.2E-1899160IPR001356Homeobox domain
PROSITE profilePS5007116.18100156IPR001356Homeobox domain
CDDcd000865.51E-16101157No hitNo description
PfamPF000468.5E-15101154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-18103163IPR009057Homeodomain-like
PRINTSPR000311.3E-5127136IPR000047Helix-turn-helix motif
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5136152IPR000047Helix-turn-helix motif
CDDcd146860.00554147191No hitNo description
PfamPF021831.0E-14156194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTLIGLLCAY DNMLFSSTGT MAFAAPETNS VDFRNHEAAN DDLPSSFPSH VFPSSCPPHQ  60
EFQGISPLLM RRAMSFDHNQ ESRVEDDMSD DDGSSHLLGE KKRRLNLEQV KALERSFEMG  120
NKLEPERKMQ LARALGLKPR QIAIWFQNRR ARCKTKQLEK DYEILKRQCD KLKADNDALK  180
TQNKKLHSEL QLLSLGNRES AGGTPPMLFN LNKENEGCNW NNNGSGDENN STIDVNLGTT  240
TRTSSTNSPL NNHDVFPTAY KVDQTVNEEG FCNMFTNVED QTNFWPLPVQ QHFY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775432.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
SwissprotQ004663e-64HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1U7W5X80.0A0A1U7W5X8_NICSY; homeobox-leucine zipper protein HAT7-like isoform X1
STRINGXP_009775432.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-56homeobox 3