PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775430.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 482aa    MW: 53197 Da    PI: 8.3844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.7e-29222280259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK  +g+++prsYYrC+ a  Cpv+k+v+r+ ed +v+++tYeg+Hnh+
  XP_009775430.1 222 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCVEDMSVLITTYEGTHNHS 280
                     8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-30206282IPR003657WRKY domain
SuperFamilySSF1182901.83E-25213282IPR003657WRKY domain
PROSITE profilePS5081127.428216282IPR003657WRKY domain
SMARTSM007744.4E-34221281IPR003657WRKY domain
PfamPF031063.0E-25222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEKKLDNSIT ETVVARNQGN NHEEEAVGNS LKADEFKSAI AEVNELRLEN ARLRVLLEQI  60
RKDYNSLQTR FSNICQPDHK RSVSPTCTTE NVAEEEYELV SLRLGRSPSR NEQYKKDDKR  120
RHSCQSSDGL KLGLDYNNEV PKSDPMKLHT DPSPDKVLET KTVDARESGP ASEVDRTMRR  180
DDNEVSQPRP SVKRAGDDEV SQPNVKRARV SVRTKCDYPT INDGCQWRKY GQKISRGNPC  240
PRSYYRCSVA PLCPVRKQVQ RCVEDMSVLI TTYEGTHNHS LPIEATAMAS TTSAAASMLL  300
SGSSSSQSAN KDLRNLPNNS KTTPLYLSNP PSNSNPFPTI TLDFTTFPTT SSFTSFNFPS  360
NFQSNTRFLS NSLNFSSPEP DTLSKILGSG YVDYDCTTTL PYSKSLANIG SSNLGRPSPA  420
QKQFDQPVLG KNNNSSSSSN KLKENSSQQA LTETLTKAIA SDPSFQSVLA AAISSMVGAT  480
KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21208282174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2204770.0AY220477.1 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 126 (ACRE126) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775430.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A1U7WME30.0A0A1U7WME3_NICSY; probable WRKY transcription factor 72
STRINGXP_009775430.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-55WRKY DNA-binding protein 72