PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775418.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25421.7 Da    PI: 5.0953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-2055107456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++++eq++ Le+ F ++++++ e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_009775418.1  55 KRKLSEEQVNLLEQSFGSEHKLDSERKDKLASELGLDPRQVAVWFQNRRARWK 107
                     45899***********************************************9 PP
2HD-ZIP_I/II119.71.6e-3854145293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv+lLE+sF +e+kL++erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+   +++rLe+e  +L+e+l+e
  XP_009775418.1  54 RKRKLSEEQVNLLEQSFGSEHKLDSERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKTEHDTNIVDKCRLENEILKLKEQLSE 145
                     8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.10349109IPR001356Homeobox domain
SMARTSM003894.4E-2052113IPR001356Homeobox domain
SuperFamilySSF466891.67E-1854117IPR009057Homeodomain-like
CDDcd000865.57E-1754110No hitNo description
PfamPF000461.8E-1755107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-2156116IPR009057Homeodomain-like
PRINTSPR000318.9E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000318.9E-689105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MIMSSSMNLQ VDDQMVLISQ YYPGIYTQEL PEQGEAKPRR RRKKSKGESS GIMRKRKLSE  60
EQVNLLEQSF GSEHKLDSER KDKLASELGL DPRQVAVWFQ NRRARWKSKK LEEEYSKLKT  120
EHDTNIVDKC RLENEILKLK EQLSEAEKEI QRLLMERCDG LNSSNSPTTS SLSMEAANME  180
PPFLGDFGME GFDNTFYVPE NNYSQGLEWV NLYMPYDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13956RRRKKSKGESSGIMRKRK
24156RKKSKGESSGIMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775418.11e-161PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232085e-76ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1U7W9V01e-160A0A1U7W9V0_NICSY; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009775418.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-60homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]