PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775317.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 736aa    MW: 81396 Da    PI: 7.3646
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-095355672254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LA+++gLt +qV++WF N R +
  XP_009775317.1 535 HPYPTDSDKHMLATQTGLTRNQVSNWFINARVR 567
                     89*****************************87 PP
2BELL104.28.9e-34390456672
            BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +kkakL+ +++e+++rYkqy++q+q+v+ssFe+vagl +a+pY+slAlk iS+hFr+L++ai++++
  XP_009775317.1 390 LQKKAKLIYMQDEICRRYKQYHQQMQMVVSSFETVAGLSAATPYISLALKSISQHFRSLRNAISDHL 456
                     57*************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-47310454IPR006563POX domain
PfamPF075261.2E-41315453IPR006563POX domain
PROSITE profilePS5007111.823508571IPR001356Homeobox domain
CDDcd000862.36E-11511572No hitNo description
SMARTSM003896.2E-9511575IPR001356Homeobox domain
SuperFamilySSF466898.13E-17513577IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-28514575IPR009057Homeodomain-like
PfamPF059207.3E-18528567IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MSDQTSEFHV AQQSRRERLR FNSEQGIQPY QYGNISYDPS VMSTEMFNFG TSTEPVVVSN  60
KDSMMMHNLE LRAASDRLDH RISHDVTQNC SNWKSIDLQQ TGNCNWNNVG NYSSGSGVVT  120
ESNLRTPMFV GDQGLSGSLN LNNVSTMDVK PNFFDYQEIQ QSPVTNSSSN MQYSSTAVLY  180
HDTLQQVVTS ATVGTRGVEM PGCGAWTESG NELLLLPNYV DHSRPLHVRN SSDLVSRPVE  240
RCHQWISCEL GTNVSTNSTA PDNSNAQALA LSLSPVPTSK TNMVQMEKRS SLSENFAIAH  300
RSAVPLGPFT GYATILKSSK FLRPAQQLMD ELCNLAAGSN TVKSCIYSKK VREGGVRVSC  360
DGNAAESSSG AVVGDSGGSS AESNGRPDYL QKKAKLIYMQ DEICRRYKQY HQQMQMVVSS  420
FETVAGLSAA TPYISLALKS ISQHFRSLRN AISDHLKNIR QALGEDLPSP ASGMSKGDGT  480
SSKMKFVDQS LHKQKAGGAG VAFFESQQHV WRPQRGLPER AVAILRAWLF DHFLHPYPTD  540
SDKHMLATQT GLTRNQVSNW FINARVRVWK PMVEEIHTLE TKGLGDQTGS SVRRSDGKLV  600
TERPNHVNDG LNRNSISISN CGQHFNVLNM SGMSEKQDDC SGIGPSERLD EDILWKNQEK  660
RSRLECHIPA SMDGSLMGFV PYQRNGLEIG GIGAVSLTLG LRQNAEAALQ QQQLQQLHEH  720
RLRQQFGGQM IHDFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16517574158Homeobox protein Meis1
4xrs_B3e-16517574158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3936511e-120JN393651.1 Nicotiana tabacum clone Yun85-7 methylation-sensitive amplification polymorphism fragment genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775317.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_016443065.10.0PREDICTED: BEL1-like homeodomain protein 2
TrEMBLA0A1S3XT640.0A0A1S3XT64_TOBAC; BEL1-like homeodomain protein 2
TrEMBLA0A1U7W5J90.0A0A1U7W5J9_NICSY; BEL1-like homeodomain protein 2
STRINGXP_009775317.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-85BEL1-like homeodomain 8