PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009775269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 392aa MW: 44053.8 Da PI: 8.9002 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.3 | 1.3e-23 | 17 | 82 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l++++ +++ l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_009775269.1 17 RKQKSLGLLCSNFLSLYNREGIETIGLDDAARRL---GV--ERRRIYDIVNVLESIGVLARKAKNRYSWKG 82 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 67.3 | 2e-21 | 149 | 239 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllek..........seegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ + ++ ++++l+e+ak L+ + +++k+RR+YDi+NVL++++ iek ++k+++rw g XP_009775269.1 149 RREKSLGLLTQNFVKLFLCtdvskklydsVQVDMICLDEAAKILLGDgrppaMTRTKVRRLYDIANVLSSMKFIEKthhpeTRKPAFRWLG 239 689**************999999999995555*******************99999*********************99999*******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.3E-26 | 13 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.54E-15 | 17 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.8E-28 | 17 | 82 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.6E-20 | 18 | 82 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.4E-21 | 144 | 240 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.4E-28 | 149 | 239 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.35E-10 | 151 | 240 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.6E-16 | 151 | 239 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 392 aa Download sequence Send to blast |
MSLASDPSKD SRSTYCRKQK SLGLLCSNFL SLYNREGIET IGLDDAARRL GVERRRIYDI 60 VNVLESIGVL ARKAKNRYSW KGFGAIPWTL QQLKEEGLKE NVSGFDGSSS AKGSDDDDSD 120 SDSKPIVSSQ TETLNPNSNF AAASKSDNRR EKSLGLLTQN FVKLFLCTDV SKKLYDSVQV 180 DMICLDEAAK ILLGDGRPPA MTRTKVRRLY DIANVLSSMK FIEKTHHPET RKPAFRWLGM 240 RERSNDKSVD TLGANESKKR VFGTELTNTT IKRNRVALPM DGISDEATRK QLLTEVKCEN 300 LENDIHCPKQ EPGLTSSKKS YHFGPFAPPS LAQAEASEAD GMKWVHDWES LASTYRPQYH 360 NQALKDLFAH YVEAWKSWYL EVAGKNPIQL IS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 8e-35 | 17 | 231 | 4 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 1e-138 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775269.1 | 0.0 | PREDICTED: E2F transcription factor-like E2FE isoform X1 | ||||
Swissprot | Q8LSZ4 | 1e-120 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A1U7WKR6 | 0.0 | A0A1U7WKR6_NICSY; E2F transcription factor-like E2FE isoform X1 | ||||
STRING | XP_009775269.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2522 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-120 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|