PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009775047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 474aa MW: 52350.5 Da PI: 6.3099 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.5 | 3e-33 | 249 | 303 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fveav++LGGsekAtPk +l+lm+v+gLt++hvkSHLQkYR+ XP_009775047.1 249 KSRMRWTPELHEVFVEAVSKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 303 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.873 | 246 | 306 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.91E-18 | 247 | 303 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 248 | 305 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-25 | 249 | 303 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-10 | 251 | 302 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.8E-24 | 334 | 379 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MDMRRTLCIQ RSSEAQHSNM GVSGAMSTSL SILPSLEEKY LKLPDSLYVF TEKERTANLI 60 SSQAIPSASR SGTVGHLLSS SSGPQKDFHF SPTSSQENRQ HNYAFISSEA SAATCQSSLL 120 CMHSTSLDNY PIGNSSNSWG KDAYHDFTNF PTNVPVQNGR VENLPVVMAS DDHAKRSDWQ 180 EWADQLINDD DVLHSSWSNI LVDVNPPDSE PKLLGASEVL ACRPQPTPIA PCEQSFPVGS 240 PSSSTALTKS RMRWTPELHE VFVEAVSKLG GSEKATPKGV LKLMNVEGLT IYHVKSHLQK 300 YRTARYKPEP SEGTPEKKPT SVTEMPSLDL KATMGITEAL RMQMEVQKQL HEQLEIQRKL 360 QLRIEEQGKY LEMMFEKTKG MGKDLKISSS LKTDEHPSPS TKTKHLPPND KSEALEQDPL 420 SSNNASSSAG EFTHGKNKEG NSLERETCED HGSDVRDLCS PPSKRAKTEE TSAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-29 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:11511543, PubMed:17927693, PubMed:26586833). Binds as a dimer to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:11511543, PubMed:20838596, PubMed:26586833). SPX1 is a competitive inhibitor of this DNA-binding (PubMed:25271326). PHR1 binding to its targets is low Pi-dependent (PubMed:25271326). Regulates the expression of miR399 (PubMed:20838596). Regulates the expression of IPS1 (At3g09922), a non-coding RNA that mimics the target of miR399 to block the cleavage of PHO2 under Pi-deficient conditions (PubMed:17643101). Regulates lipid remodeling and triacylglycerol accumulation during phosphorus starvation (PubMed:25680792). Required for the shoot-specific hypoxic response (PubMed:24753539). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). Contributes to the homeostasis of both sulfate and phosphate in plants under phosphate deficiency (PubMed:21261953). Required for adaptation to high light and retaining functional photosynthesis during phosphate starvation (PubMed:21910737). Involved in the coregulation of Zn and Pi homeostasis (PubMed:24420568). {ECO:0000269|PubMed:11511543, ECO:0000269|PubMed:17643101, ECO:0000269|PubMed:17927693, ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:21261953, ECO:0000269|PubMed:21910737, ECO:0000269|PubMed:23788639, ECO:0000269|PubMed:24420568, ECO:0000269|PubMed:24753539, ECO:0000269|PubMed:25271326, ECO:0000269|PubMed:25680792, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Only moderately up-regulated by Pi starvation. {ECO:0000269|PubMed:11511543}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238342 | 0.0 | AC238342.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH170O21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775047.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_016436479.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q94CL7 | 1e-89 | PHR1_ARATH; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A1S3X9J6 | 0.0 | A0A1S3X9J6_TOBAC; protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A1U7W4U0 | 0.0 | A0A1U7W4U0_NICSY; protein PHR1-LIKE 1-like | ||||
STRING | XP_009775047.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4582 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 5e-92 | phosphate starvation response 1 |