PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774800.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 281aa    MW: 32306.9 Da    PI: 9.708
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsst klyeyss
  XP_009774800.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSS 59
                    8***********************************************96 PP
2K-box86.36.1e-291282141399
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +e +q+e+a L++++enLq+++R+++Ge+L+ L++k+Lq+Le+qLe sl+ +R +K+++++++++el +k +  ++en++L kkl+
  XP_009774800.1 128 RSEFWQREAALLRQQLENLQENHRQMMGEELSGLNVKDLQNLEKQLEMSLRGVRMRKDQIMIDEVQELNQKGNLSHQENMELYKKLD 214
                     5799********************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.483161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.06E-43277No hitNo description
SuperFamilySSF554551.57E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-27128213IPR002487Transcription factor, K-box
PROSITE profilePS5129716.457129219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRGKIMIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TSKLYEYSST  60
SMKSVIERYN KAKEETHKLG DPISEVKGKQ KSEGQIIGEE NVIKGKITET LDPHVFRSYM  120
ALILLPNRSE FWQREAALLR QQLENLQENH RQMMGEELSG LNVKDLQNLE KQLEMSLRGV  180
RMRKDQIMID EVQELNQKGN LSHQENMELY KKLDLARQEN TELYKKVYGT RDANAVSRNA  240
MSSNSLRVNE DPHAPLHLQL SQPQQQHYET PGTTKLGLSL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21194195MEF2C
5f28_B3e-21194195MEF2C
5f28_C3e-21194195MEF2C
5f28_D3e-21194195MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754437e-56HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755167e-56HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774800.10.0PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-101MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U7WKL80.0A0A1U7WKL8_NICSY; MADS-box transcription factor 23-like
STRINGXP_009774800.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-81AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]