PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009774581.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 303aa MW: 33097.7 Da PI: 7.6779

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009774581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.1	0.00018	199	237	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_009774581.1 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 237 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.40E-7	183	241	No hit	No description
PROSITE profile	PS50888	11.566	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-8	197	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-11	197	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAGNPTNNWW SMMMNGSMHP NHESQQFSSS SSSSSSQHFY GSSNYLADIN IPSHDFPRSW 60 SQLLLSGLSG EQEKSGMSHY HQYKKLQEKW EEVQSLNSIN PSSSCFRVPV VDVKPQVVGQ 120 VLYGNYQDLP AASSPANSCV TTTLSDNILN YSGNKITSKV EAKHQHPDDS SECNSTSRGG 180 VTKKARVQHS SAQPSLKVRK EKLGDRITAL HQLVSPFGKT DTASVLSEAI GYIRFLQGQI 240 QALSSPYMGN VEGSMGHTHQ QSDSQVKDLR SRGLCLVPIS CTQHVGNDTV GDYWAPALGG 300 GYL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774581.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X2
Refseq	XP_016489361.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X2
Swissprot	Q8S3D1	1e-49	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A1S4BKF2	0.0	A0A1S4BKF2_TOBAC; transcription factor bHLH68-like isoform X2
TrEMBL	A0A1U7WBG8	0.0	A0A1U7WBG8_NICSY; transcription factor bHLH68-like isoform X2
STRING	XP_009774580.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-50	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]