PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009774531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 43622.9 Da PI: 6.3801 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.4 | 2.5e-31 | 17 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevls 94 p G+rF P+d++l+ yL kv+g+ ++ i+++diy++ P +L ++ eek +yfF++r++ky++g ++ r+t+ +gyWk t k +++++ XP_009774531.1 17 PIGYRFVPNDQQLL-LYLLYKVKGEFIPP-GLIQDADIYECSPFQLS-GMDMEEKYTYFFTRRERKYPNGFKTDRSTRdgKGYWKITSKLTPIFT 108 89************.8999*******999.89**************8.677788999******************9987789************* PP NAM 95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ + g k++Lv+y + + ++ kt+W+mhe +l XP_009774531.1 109 AGNLQFGKKNVLVYYlkTPKGQNDIKTNWIMHELEL 144 ***************4323555566********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-35 | 12 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.557 | 16 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-15 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MSEAKEEGSH QYMKQYPIGY RFVPNDQQLL LYLLYKVKGE FIPPGLIQDA DIYECSPFQL 60 SGMDMEEKYT YFFTRRERKY PNGFKTDRST RDGKGYWKIT SKLTPIFTAG NLQFGKKNVL 120 VYYLKTPKGQ NDIKTNWIMH ELELNKSLFP RHAPEEKFND FIVCRIYDRE KRKGDDQRDM 180 VNSLIEPKQV MNHNNGEPLR STKRKFKINK TIINSNYLYN GHELQATAAS DLGQTSSADI 240 MSTIMANPIA DNHPQQVVQH THVTGDQNVH LSNNNNNNIS NVFPRDVYLS GEQNINSGHH 300 RLVKSEGNVF NDPKLESSTS QHMRGDESIP LVPENDCWPP SEEFWDGLPD MPPMDDFSNY 360 MDLLGFDLDQ TQPKTLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-24 | 17 | 170 | 18 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-24 | 17 | 170 | 18 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-24 | 17 | 170 | 18 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-24 | 17 | 170 | 18 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-23 | 17 | 170 | 21 | 169 | NAC domain-containing protein 19 |
4dul_A | 8e-24 | 17 | 170 | 18 | 166 | NAC domain-containing protein 19 |
4dul_B | 8e-24 | 17 | 170 | 18 | 166 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774531.1 | 0.0 | PREDICTED: NAC domain-containing protein 19-like | ||||
TrEMBL | A0A1U7WBC4 | 0.0 | A0A1U7WBC4_NICSY; NAC domain-containing protein 19-like | ||||
STRING | XP_009774531.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17867 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 6e-24 | NAC domain containing protein 102 |