PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009774486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 413aa MW: 47397.1 Da PI: 5.1098 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.3 | 2e-55 | 4 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+ ++ky++g+r+nratk+gyWkatgkd++v XP_009774486.1 4 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPCNRKYPNGSRTNRATKAGYWKATGKDRKVN 97 79****************************.99***************6434555777************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + ++vg+kktLv+y+grap+g +tdW+mheyrl XP_009774486.1 98 S-QMRAVGMKKTLVYYRGRAPHGGRTDWIMHEYRL 131 *.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-62 | 2 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.413 | 4 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-29 | 5 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MVSLPPGFRF HPTDEELVAY YLKRKINGRK IELEIIPEVD LYKCEPWDLP GKSLLPSKDL 60 EWYFFSPCNR KYPNGSRTNR ATKAGYWKAT GKDRKVNSQM RAVGMKKTLV YYRGRAPHGG 120 RTDWIMHEYR LNERECEVAN GLQDAYALCR IFKKSLNAPK VVDPYASDRS SSIDLYSDGR 180 CDDNMESSDY RRPTQESPLH LAAAGPSDDD KWVQYLSSDE AFSFNVSTPP SIPNYGTLPY 240 APPKVNIALE CAKLQHRLAL PPLEVQDFPQ AGYVNYSRMS QSSNNIHQNT NQTDIIQEIF 300 SVAQASQDHI NQDSFGGNYA NQIHDLGSFN FMEQFNEDHN GRSIEIGGLD EDFKSDRIVE 360 NLRWIGMSDM DLEKSYLEDY KTVPIENVSA VLKEEYELEG ITYFLNFFLN YLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 2 | 160 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 9e-41 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774486.1 | 0.0 | PREDICTED: NAC domain-containing protein 67-like, partial | ||||
Refseq | XP_016490095.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 1e-106 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A1S4BMM0 | 0.0 | A0A1S4BMM0_TOBAC; NAC domain-containing protein 86-like | ||||
TrEMBL | A0A1U7WB83 | 0.0 | A0A1U7WB83_NICSY; NAC domain-containing protein 67-like | ||||
STRING | XP_009774486.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1495 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-136 | NAC domain containing protein 28 |
Publications ? help Back to Top | |||
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