PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774486.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 413aa    MW: 47397.1 Da    PI: 5.1098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32e-5541311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+ ++ky++g+r+nratk+gyWkatgkd++v 
  XP_009774486.1   4 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPCNRKYPNGSRTNRATKAGYWKATGKDRKVN 97 
                     79****************************.99***************6434555777************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s + ++vg+kktLv+y+grap+g +tdW+mheyrl
  XP_009774486.1  98 S-QMRAVGMKKTLVYYRGRAPHGGRTDWIMHEYRL 131
                     *.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-622154IPR003441NAC domain
PROSITE profilePS5100560.4134154IPR003441NAC domain
PfamPF023651.9E-295131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVSLPPGFRF HPTDEELVAY YLKRKINGRK IELEIIPEVD LYKCEPWDLP GKSLLPSKDL  60
EWYFFSPCNR KYPNGSRTNR ATKAGYWKAT GKDRKVNSQM RAVGMKKTLV YYRGRAPHGG  120
RTDWIMHEYR LNERECEVAN GLQDAYALCR IFKKSLNAPK VVDPYASDRS SSIDLYSDGR  180
CDDNMESSDY RRPTQESPLH LAAAGPSDDD KWVQYLSSDE AFSFNVSTPP SIPNYGTLPY  240
APPKVNIALE CAKLQHRLAL PPLEVQDFPQ AGYVNYSRMS QSSNNIHQNT NQTDIIQEIF  300
SVAQASQDHI NQDSFGGNYA NQIHDLGSFN FMEQFNEDHN GRSIEIGGLD EDFKSDRIVE  360
NLRWIGMSDM DLEKSYLEDY KTVPIENVSA VLKEEYELEG ITYFLNFFLN YLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-55216018174NAC domain-containing protein 19
3swm_B2e-55216018174NAC domain-containing protein 19
3swm_C2e-55216018174NAC domain-containing protein 19
3swm_D2e-55216018174NAC domain-containing protein 19
3swp_A2e-55216018174NAC domain-containing protein 19
3swp_B2e-55216018174NAC domain-containing protein 19
3swp_C2e-55216018174NAC domain-containing protein 19
3swp_D2e-55216018174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754419e-41HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774486.10.0PREDICTED: NAC domain-containing protein 67-like, partial
RefseqXP_016490095.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI51e-106NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A1S4BMM00.0A0A1S4BMM0_TOBAC; NAC domain-containing protein 86-like
TrEMBLA0A1U7WB830.0A0A1U7WB83_NICSY; NAC domain-containing protein 67-like
STRINGXP_009774486.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14952348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-136NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]