PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774387.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 317aa    MW: 36343.8 Da    PI: 6.7078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G+g+W+  ++  g+ R++k+c++rw +yl
   XP_009774387.1 14 KGPWTPEEDQKLIHYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.84.5e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
   XP_009774387.1  67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.917965IPR017930Myb domain
SuperFamilySSF466892.05E-3111108IPR009057Homeodomain-like
SMARTSM007174.0E-151363IPR001005SANT/Myb domain
PfamPF002493.5E-171461IPR001005SANT/Myb domain
CDDcd001674.72E-131661No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129420.18466116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1567111IPR001005SANT/Myb domain
CDDcd001677.45E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRTPCCDKN GLKKGPWTPE EDQKLIHYIQ LHGPGNWRNL PKNAGLQRCG KSCRLRWTNY  60
LRPDIRRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHRPRL DFLDLSSLFN STQLNLSSLL GLQALVNPEI LKLANSLLIS QTENPELLLQ  180
KIQENQLLNG QIQNSQGPNI SNNQTSMFQY NNQLHHQVPE IPNCTPNVSC SSSHQSMNGQ  240
IFQENMMLPL QYYSNYSASD ATENSTFQSL NNSSNQNSQN FSFDTPLSSG IEDEKESYCS  300
NFMKFEIPES LDFDDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-301211625128MYB TRANSFORMING PROTEIN
1mse_C5e-30121162105C-Myb DNA-Binding Domain
1msf_C5e-30121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2447211e-45AC244721.5 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-58o17 map 10, complete sequence.
GenBankHG9754491e-45HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755221e-45HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774387.10.0PREDICTED: transcription factor MYB34-like
RefseqXP_016451723.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LDR81e-104MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1S3YI600.0A0A1S3YI60_TOBAC; transcription factor MYB34-like
TrEMBLA0A1U7W2V70.0A0A1U7W2V7_NICSY; transcription factor MYB34-like
STRINGXP_009774387.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-94MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]