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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009774018.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 277aa MW: 31392 Da PI: 9.3473 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 36.6 | 8.2e-12 | 105 | 150 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h +Er+RR+++ + f L +llP + +K++Ka+iLe A+ +I++
XP_009774018.1 105 EHLLAERKRRQKMTKLFVSLASLLPGL-----TKMDKASILEGATSFIRQI 150
68889*********************9.....9***************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.44E-13 | 100 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 15.04 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.4E-9 | 105 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 105 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 3.93E-10 | 106 | 155 | No hit | No description |
| SMART | SM00353 | 6.4E-12 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 277 aa Download sequence Send to blast |
MDDLALIFSH HNHETSRKRL HEDEKAAALA CIISFNTTTP NSSQYYSSTK AEANQQQKQI 60 QCNHTKWGPG RIICTTEANP NTINFSPFVY QNGGTARRTG EQAEEHLLAE RKRRQKMTKL 120 FVSLASLLPG LTKMDKASIL EGATSFIRQI REKTETMKGH LKTKTNNEKG AVPAVKKARN 180 YEHQYSIDMS ILPEIEIRSL EEEVLITVYC KKKYTGIIDE ILGVIQKLHL TIKSSNFMSF 240 GSTAIHITVV AQMKDEFCET TDCLAEKLRQ SILKTLR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 109 | 114 | ERKRRQ |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009774018.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
| TrEMBL | A0A1U7W5Y1 | 0.0 | A0A1U7W5Y1_NICSY; transcription factor bHLH18-like | ||||
| STRING | XP_009774018.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA14501 | 9 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37850.1 | 5e-27 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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