PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009773865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33602.8 Da PI: 6.8822 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.9e-53 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+ +++++++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s XP_009773865.1 9 LPPGFRFHPTDEELIMYYLRYQATSRPCPV-SIIPEVDLYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIYS- 101 79****************************.89***************99999*****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+kk Lvfykg+ pkg+ktdW+mheyrl XP_009773865.1 102 ASKYVGVKKALVFYKGKPPKGVKTDWIMHEYRL 134 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-65 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.935 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-26 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MVGKISSDLP PGFRFHPTDE ELIMYYLRYQ ATSRPCPVSI IPEVDLYKFD PWELPEKAEF 60 GENEWYFFTP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SASKYVGVKK ALVFYKGKPP 120 KGVKTDWIMH EYRLNESRSQ PNKQSGSMRL DDWVLCRIYK KKNMGKSMEM MKAEEEESEA 180 QIEITNNDIE VVGATTSGPQ TNKLPRNCSL SHLLELDYFG SIPQLLGDNS YHTSFDIDQS 240 YTMNSVNTNV VHQMEKSQLG EVSHQHNSQN NNYNIFFNQQ PVFVNPAFQF Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-72 | 8 | 163 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773865.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_016457734.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | K4BWV2 | 1e-166 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A1S3YZW3 | 0.0 | A0A1S3YZW3_TOBAC; NAC transcription factor 29-like | ||||
TrEMBL | A0A1U7WI01 | 0.0 | A0A1U7WI01_NICSY; NAC transcription factor 29-like | ||||
STRING | XP_009773865.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-107 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
---|---|---|---|
|