PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009773823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 32288.4 Da PI: 8.8433 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.6 | 1.5e-33 | 52 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksg 81 lp+G++F+P+d+el+ e+L++kv+ + ++++ + ++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ ++ XP_009773823.1 52 LPAGVKFDPSDQELL-EHLEAKVRLDAhklhplIDEFIHsLEGEnGICYTHPEKLP-GVSQDGIIRHFFHRPSKAYTTGTRKRRKvdtdieGNET 144 799************.99****999884554332222222433336**********.554555577******************74554443388 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ kg+++g kk+Lv+y g+++k+ekt+Wvmh+y+l XP_009773823.1 145 RWHKTGKTRPVVV-KGKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 192 8************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-38 | 47 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.136 | 52 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-15 | 53 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MTCINDSVNE QSISINVTNE STTNTTKTRT CPSCGHLIKS EEKAGIHNLP GLPAGVKFDP 60 SDQELLEHLE AKVRLDAHKL HPLIDEFIHS LEGENGICYT HPEKLPGVSQ DGIIRHFFHR 120 PSKAYTTGTR KRRKVDTDIE GNETRWHKTG KTRPVVVKGK VKGHKKILVL YTNYGKQRKP 180 EKTNWVMHQY HLGDNEDEKE GELVVSKVFY QTQPRQCGNS LLRNNCPPPS IRANIGQASQ 240 FRDNTTFVQC FNNPTLISFD QYEHNNRPTP RLPNFNLPDA SFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-104 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773823.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Refseq | XP_016453133.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-115 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1S3YM17 | 0.0 | A0A1S3YM17_TOBAC; NAC domain-containing protein 73-like | ||||
TrEMBL | A0A1U7W5D4 | 0.0 | A0A1U7W5D4_NICSY; NAC domain-containing protein 8-like | ||||
STRING | XP_009773823.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-103 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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