PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009773812.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1778aa MW: 200224 Da PI: 5.7242

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009773812.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.9	3e-17	37	91	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + + yps++ r+eL+ klgL++rq ++WF+ rR k++k XP_009773812.1 37 KRKMKTASQLEILENTYTVETYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 91 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-16	20	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-15	28	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.985	32	92	IPR001356	Homeobox domain
SMART	SM00389	1.1E-14	34	96	IPR001356	Homeobox domain
CDD	cd00086	5.90E-12	35	91	No hit	No description
Pfam	PF00046	6.7E-15	37	91	IPR001356	Homeobox domain
SMART	SM00571	1.9E-22	562	621	IPR018501	DDT domain
PROSITE profile	PS50827	16.96	562	621	IPR018501	DDT domain
Pfam	PF02791	1.2E-18	563	618	IPR018501	DDT domain
Pfam	PF05066	3.2E-15	744	812	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.6E-8	961	1001	IPR028942	WHIM1 domain
Pfam	PF15613	7.1E-13	1144	1216	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1778 aa Download sequence Send to blast
MEPDSSAAAA ATAAGGGSGS SDVEKKKLPE GGEPKVKRKM KTASQLEILE NTYTVETYPS 60 EALRAELSVK LGLSDRQLQM WFCHRRLKDR KATTPVKRQK KEASPVAMVD EMAVSGETGK 120 KHASGSGSRV SPLGLMDLQL QQQHHQQRVA HRPGTAVPRF RTEMPALKRY YEPPQAISEL 180 RAIAFVEAQL GQPLREDGPI LGMEFDPLPP GAFGAPIVAA MQHKPVGRPF EAQIYERPDV 240 NSIKGTTRTL HEYQFLPEQP SIRSDAYEQS VPSHYHSSIE VQSTRTMLST GRSFMHGSEQ 300 VASGYSIPGQ IPTLNLLPQG KQGHKSPASA EADAVPQRSL VNIEVEAHYG GQPMMALESP 360 FMPRVIHDEE RLERKRKSEE ARIAREVEAH EKRIRKELEK QDMLRRKREE QLRKDMERQD 420 RERRKEEERL LREKQREEER FQREQRREIE RREKFLQKET IKAEKMRLKE EMRREKEVAR 480 LKAANVRATA RRIAKESTEL VDDERLELME LAASKKGLPS ILSLDSENLQ NLEAFRDMLI 540 EFPPKSVCLR KPFGVEPWIC SEEDVGNLLM VWRFLITFSD VLRLWPFTLD EFVQAFHDFD 600 PRLLAEIHIA LLKLIIKDIE DVARTPASAV GANPNSGANP GGGHPEIVEG AYAWGFDIRS 660 WQSHLNALTW PEILRQFALS AGFGPKLKKQ SVEPAYPRDE NEGNDGADII SNLRSGVAAE 720 KAVAKLQERG FSNPRRSRHR LTPGTVKFAA FHILSLEGSK GLNILDVAEK IQKSGLRDLT 780 TSKTPEASIS AALSRDTKLF ERTAPSTYCL RDPYRKDPAD ADAILSAARE KIRVFKNECL 840 NGEEAEDVEK EVERDDESES DAADDPEVDD LVSELKFAET PQSHKTDRTD GMNSTEDVSE 900 ILRFDLTQTP GDVCLQNSTG IMHSESFGEL KPIGTSGSQS AAIGADSSSL NQEDVVIDES 960 NAGQKWVQGL IEGEYSDLTV EERLDALVAL IGVANEGNSI RLVLEERLEA ASALKKQIWA 1020 EAQLDKRRFK EEFLLKVQYP SVSNNAERFC SVTSREARQS PLLAVDGHND VAAIRSLQQE 1080 AMHKLPDESN NSRNVAVEKA CPMQEIYGGQ DNSQFQHFAY VAEKSRSQLK AYISHRAEET 1140 FVYRSLPLGQ DRRRNRYWQF VTSPSRNDPG SGRIFVELRD GRWRLIDSEK DFNALMASLD 1200 VRGIRESHLH SMLQNIEATF KETSRRYMYT EAKVGNPVKA DTSETVPSND CCSKTGSPKS 1260 TICISNCETS EPSTSFRIGI GRNKMENSDA LSRYADLEKW MWEECVNTQF LCARKYGKMR 1320 CEKLISICNN CYDTYFLEEN HCRCCHTTFS PAKSSCFMEH VAQCKDKLEA LFRPLISDAA 1380 PPLQIRLLRA QLASMEACIP PEALEPVWSE VYRRSWGLKL HIASAAGDLL QILTLLEGAI 1440 KREYLMSDYE TTTELLGAVS TSNLERMPVL PWIPHTTPAV ALRLMELDSS LCYTQQQKAD 1500 SLKDKESANF TTFKTNYADM KRVAGIISAE APLEYENLEP DFSVTVGGRH SNSGQGRNHV 1560 RGGAHGRVHG GRSQRKLSAS KSESAQRTPT KYNDRFDHLS PWKSRDRGKG RRKRGRRSVR 1620 NRQKPVKNVK NVAIEKVPIP SQQKWKEDEE TAAAQFEAPG NDSDPGTSGS EDDNGQATAN 1680 DYEDLMADDY GVLRNKTDHV SNSVNYSVGE HYIEPVYGDD VDDYEDDRDE EDEEDGLADE 1740 NVQRYFDAGS EEEGNRFMDG ELVENLNKDS ESSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1778 aa Download sequence Send to blast

MEPDSSAAAA ATAAGGGSGS SDVEKKKLPE GGEPKVKRKM KTASQLEILE NTYTVETYPS  60
EALRAELSVK LGLSDRQLQM WFCHRRLKDR KATTPVKRQK KEASPVAMVD EMAVSGETGK  120
KHASGSGSRV SPLGLMDLQL QQQHHQQRVA HRPGTAVPRF RTEMPALKRY YEPPQAISEL  180
RAIAFVEAQL GQPLREDGPI LGMEFDPLPP GAFGAPIVAA MQHKPVGRPF EAQIYERPDV  240
NSIKGTTRTL HEYQFLPEQP SIRSDAYEQS VPSHYHSSIE VQSTRTMLST GRSFMHGSEQ  300
VASGYSIPGQ IPTLNLLPQG KQGHKSPASA EADAVPQRSL VNIEVEAHYG GQPMMALESP  360
FMPRVIHDEE RLERKRKSEE ARIAREVEAH EKRIRKELEK QDMLRRKREE QLRKDMERQD  420
RERRKEEERL LREKQREEER FQREQRREIE RREKFLQKET IKAEKMRLKE EMRREKEVAR  480
LKAANVRATA RRIAKESTEL VDDERLELME LAASKKGLPS ILSLDSENLQ NLEAFRDMLI  540
EFPPKSVCLR KPFGVEPWIC SEEDVGNLLM VWRFLITFSD VLRLWPFTLD EFVQAFHDFD  600
PRLLAEIHIA LLKLIIKDIE DVARTPASAV GANPNSGANP GGGHPEIVEG AYAWGFDIRS  660
WQSHLNALTW PEILRQFALS AGFGPKLKKQ SVEPAYPRDE NEGNDGADII SNLRSGVAAE  720
KAVAKLQERG FSNPRRSRHR LTPGTVKFAA FHILSLEGSK GLNILDVAEK IQKSGLRDLT  780
TSKTPEASIS AALSRDTKLF ERTAPSTYCL RDPYRKDPAD ADAILSAARE KIRVFKNECL  840
NGEEAEDVEK EVERDDESES DAADDPEVDD LVSELKFAET PQSHKTDRTD GMNSTEDVSE  900
ILRFDLTQTP GDVCLQNSTG IMHSESFGEL KPIGTSGSQS AAIGADSSSL NQEDVVIDES  960
NAGQKWVQGL IEGEYSDLTV EERLDALVAL IGVANEGNSI RLVLEERLEA ASALKKQIWA  1020
EAQLDKRRFK EEFLLKVQYP SVSNNAERFC SVTSREARQS PLLAVDGHND VAAIRSLQQE  1080
AMHKLPDESN NSRNVAVEKA CPMQEIYGGQ DNSQFQHFAY VAEKSRSQLK AYISHRAEET  1140
FVYRSLPLGQ DRRRNRYWQF VTSPSRNDPG SGRIFVELRD GRWRLIDSEK DFNALMASLD  1200
VRGIRESHLH SMLQNIEATF KETSRRYMYT EAKVGNPVKA DTSETVPSND CCSKTGSPKS  1260
TICISNCETS EPSTSFRIGI GRNKMENSDA LSRYADLEKW MWEECVNTQF LCARKYGKMR  1320
CEKLISICNN CYDTYFLEEN HCRCCHTTFS PAKSSCFMEH VAQCKDKLEA LFRPLISDAA  1380
PPLQIRLLRA QLASMEACIP PEALEPVWSE VYRRSWGLKL HIASAAGDLL QILTLLEGAI  1440
KREYLMSDYE TTTELLGAVS TSNLERMPVL PWIPHTTPAV ALRLMELDSS LCYTQQQKAD  1500
SLKDKESANF TTFKTNYADM KRVAGIISAE APLEYENLEP DFSVTVGGRH SNSGQGRNHV  1560
RGGAHGRVHG GRSQRKLSAS KSESAQRTPT KYNDRFDHLS PWKSRDRGKG RRKRGRRSVR  1620
NRQKPVKNVK NVAIEKVPIP SQQKWKEDEE TAAAQFEAPG NDSDPGTSGS EDDNGQATAN  1680
DYEDLMADDY GVLRNKTDHV SNSVNYSVGE HYIEPVYGDD VDDYEDDRDE EDEEDGLADE  1740
NVQRYFDAGS EEEGNRFMDG ELVENLNKDS ESSSEYSD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773812.1	0.0	PREDICTED: uncharacterized protein LOC104223969
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1U7W199	0.0	A0A1U7W199_NICSY; uncharacterized protein LOC104223969
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator