PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009773664.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 922aa MW: 103125 Da PI: 6.0452 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93.3 | 1.8e-29 | 613 | 664 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009773664.1 613 AEKNITLQILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 664 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.733 | 603 | 684 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-25 | 616 | 664 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.32E-21 | 816 | 904 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 3.4E-20 | 822 | 903 | No hit | No description |
PROSITE profile | PS51745 | 22.054 | 824 | 907 | IPR000270 | PB1 domain |
SMART | SM00666 | 3.0E-20 | 824 | 907 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.2E-16 | 826 | 903 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.17E-36 | 826 | 903 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 922 aa Download sequence Send to blast |
MSMDERFVVT NTFLTTQFDA FMDLDYMDEL LLEGCFLETI DDRDFVHHRP SISNMPFDSS 60 FVWPTLLDTN GFEFSGSPSK DGQQERQRSS FSKNLSISQF QELNSAKVQS FGDNSINAMC 120 SSGQSENCLF DAPELSRRWW IGPNASSSVM DRLIQALGYI KNFSKDKDIL IQIWVPIYRD 180 GKRVLSTNDQ PFSLDLNCPR LAHYRQASLS YQFPANDDSK EIVGLPGRVF LDKVPEWSPD 240 VQFFQMEEYP RVGHAQQHNV RGTFAVPVFE QGSHNCLSVI EVVMTTQKIK YGSELESVCK 300 ALEAVDLRSS EVSSTLSAKA CDLTYQAALS EILEVLKSAC KTHGLPLAQT WVPCIQHGKG 360 GSRHSNENLV RCVSTEDSAC YVADPRVQGF HEACSEHHLL KGQGVVGSAF MTNQPCFTSD 420 LTSYSKAEYP LSHYARMFGL HAAVAIPLRS MSTGSSDFVL EFLLPPNCRN PEEHKSMLTS 480 LSIIIQNVCQ TYRVVSEKEL QEETVSLGEV TSLAASEYTE EVREKERKGS IVSSQERTSW 540 TSSHIEVQQT SSVISAFQDE KPVEVLTEEP VTFRNQTNSG SATTFAFSRN YRTSGEGISH 600 TWRKARDRRR LKAEKNITLQ ILQQYFAGSL KDAAKSIGVC PTTLKRICRQ HGIQRWPSRK 660 IKKVGLSLER IQRVINSVQG VSGTLQIESF YSDFPELASS NISRSSPFAD PTSNNHPEDL 720 NRQPESGGND AAISKSVSSS CSQGSSSSQR STGTQLAGHE DPVAEEASDN HALKRVNSDA 780 ELHLSSEALN PLPRSQSHTS LTESPESVSL SPVKKSLWRS QEGAPRIKVI HGEEKIRFRM 840 QKNWGYKELM REIARRFGVD DPIGFHLKYL DDDSDWVLLA CEADLEECIH VCWSSQNQTI 900 RLLFLCDLQP HLGSSFDSSS SL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773664.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_009773735.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_009773797.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
TrEMBL | A0A1U7W185 | 0.0 | A0A1U7W185_NICSY; protein NLP5-like | ||||
STRING | XP_009773664.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |