PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773564.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 325aa    MW: 36146.1 Da    PI: 4.7908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-194191155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  XP_009773564.1 41 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRR 91
                    6899******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.90E-254186No hitNo description
PfamPF008471.7E-124191IPR001471AP2/ERF domain
SMARTSM003801.6E-2642113IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-184293IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-254294IPR001471AP2/ERF domain
PROSITE profilePS5103219.80942101IPR001471AP2/ERF domain
PRINTSPR003671.4E-84354IPR001471AP2/ERF domain
PRINTSPR003671.4E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNIIKSSTSS STNKSTKPRK NIGSNVSSNG KQNAEEQQNN CRYLGVRRRP WGRYAAEIRD  60
PNTKERHWLG TFDTAEEAAL AYDRAARSMR RNNNNNKSNK PTRTNFVYSD MPPGSSVTCV  120
ISPDDEYHHH HHLQQQQLLV FGQVENVSVP AVDYADFSQF SINNGGGSGG GEFALQQYYN  180
PNYNVHMEES YRCDSNNATS TELPPLPEDI TSSGNFYYYS EESNNEGAQF PATTAISSVS  240
DHMGYSSSNS TSLLNEMMPM SFGTNDYEYQ YGVTCGVLGG GSTVTTTSES YNGFGFDDCL  300
QPLQYCSSNI MQDESTNTTL GYWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-174390351ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773564.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A1U7WG030.0A0A1U7WG03_NICSY; ethylene-responsive transcription factor LEP-like
STRINGXP_009773564.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-24ERF family protein