PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773411.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 600aa    MW: 67798.6 Da    PI: 5.623
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31e-2152151197
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd+ ++  l++p k a ++      + +k+ + +l+++d+ g++W++k+ + ++++r++lt+GW+ Fv+ ++L +gD vvF   ++++
  XP_009773411.1  52 FCKVLTASDTKSNWGLSIPQKDAVKCfplldmSRDKPIQ-ELVVKDLPGKEWRFKHVFGGHPRRHLLTNGWSAFVNGKKLVAGDLVVFL--REEN 143
                     99****************************995555564.9************************************************..4467 PP

                     E..EEEEE CS
              B3  90 felvvkvf 97 
                     +  +v+++
  XP_009773411.1 144 GDVHVGFR 151
                     76788876 PP
2Auxin_resp29.43.5e-11177231157
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsser 57 
                     a++a++++ +F+v+ +P++  s+F+++++k+++a+++ + v m f m  e  +s+e 
  XP_009773411.1 177 ASDALASQRPFSVYCKPQT--SQFIISLNKYLEAINRGLGVSMTFTMPSEVANSHES 231
                     567899***********95..9***************************99988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-3545159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-2847151IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-1950151No hitNo description
PROSITE profilePS5086312.33752154IPR003340B3 DNA binding domain
PfamPF023625.3E-1952150IPR003340B3 DNA binding domain
SMARTSM010192.6E-1652154IPR003340B3 DNA binding domain
PfamPF065077.0E-9177230IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MMHHGLIRGK TVEHISEEVC AEINLLPKHD QTEPVNPDFY HSEIPRPQIH SFCKVLTASD  60
TKSNWGLSIP QKDAVKCFPL LDMSRDKPIQ ELVVKDLPGK EWRFKHVFGG HPRRHLLTNG  120
WSAFVNGKKL VAGDLVVFLR EENGDVHVGF RHLLCEKSSV EAPIASSLDI KGVLAAASDA  180
LASQRPFSVY CKPQTSQFII SLNKYLEAIN RGLGVSMTFT MPSEVANSHE SFTCMTNEKD  240
QMQINQFSQN TNVFLNEDEE HMEDAEAIVY SPPQHSMTPS GIGEKRHSDH TIYISPLEGN  300
VESTCGTRKH NEVSNPAEIE SIRGTEEPKA ITSSSWDFNP IQGLELEDTE IIKDILPIVS  360
QNLPLDYTVS SNTDNDHFLP IMQDSEEWQN FQGTDFPLHG QSPSENHNMQ NFFNKDQQNS  420
SKAMHPTSIS SQIPYDGPGH ADEKVHWEGY HVARRYIPIL NRIISQYPST LSSFKATSPI  480
FQSMCLEILA ELVYLLGQFT TGNMDIKYHS EAKRYLRDLK LSGIEIGWLE KRLAKVEDIF  540
SMKRISIRRQ ELILGIEDTT ATLRLMNEEL GSLEKDLQKL SSNINLKNPA EDHPILEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-581022182296Auxin response factor 1
4ldw_A4e-581022182296Auxin response factor 1
4ldw_B4e-581022182296Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773407.10.0PREDICTED: uncharacterized protein LOC104223639 isoform X2
RefseqXP_009773408.10.0PREDICTED: uncharacterized protein LOC104223639 isoform X2
RefseqXP_009773409.10.0PREDICTED: uncharacterized protein LOC104223639 isoform X2
RefseqXP_009773411.10.0PREDICTED: uncharacterized protein LOC104223639 isoform X2
RefseqXP_016513814.10.0PREDICTED: uncharacterized protein LOC107830695 isoform X3
RefseqXP_016513815.10.0PREDICTED: uncharacterized protein LOC107830695 isoform X3
RefseqXP_016513816.10.0PREDICTED: uncharacterized protein LOC107830695 isoform X3
RefseqXP_016513817.10.0PREDICTED: uncharacterized protein LOC107830695 isoform X3
TrEMBLA0A1S4DKK90.0A0A1S4DKK9_TOBAC; Auxin response factor
TrEMBLA0A1U7WFI70.0A0A1U7WFI7_NICSY; Auxin response factor
STRINGXP_009773406.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.12e-63auxin response factor 11