PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773396.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 467aa    MW: 51678.7 Da    PI: 9.7082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32194250360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d+++ ei+Y+geHnh+k
  XP_009773396.1 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHLKCPVKKKVERSF-DGQIAEIVYRGEHNHPK 250
                     9***************************************.***************85 PP
2WRKY98.44.6e-31387442358
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     Dg++WrKYGqK+vkgs +prsYYrCts++C+v+k ver+++dpk +++tYeg+Hnh
  XP_009773396.1 387 DGFRWRKYGQKVVKGSSYPRSYYRCTSPKCNVRKFVERTTDDPKEFITTYEGKHNH 442
                     9******************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-29182251IPR003657WRKY domain
SuperFamilySSF1182902.48E-25191251IPR003657WRKY domain
SMARTSM007744.1E-36192250IPR003657WRKY domain
PROSITE profilePS5081123.697194251IPR003657WRKY domain
PfamPF031066.4E-25194249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-31377445IPR003657WRKY domain
SuperFamilySSF1182901.7E-27380445IPR003657WRKY domain
PROSITE profilePS5081132.26380445IPR003657WRKY domain
SMARTSM007741.0E-34385444IPR003657WRKY domain
PfamPF031067.7E-25387442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEVNEGAKIA VARPVASRPR CPIYKSFSEL LAGAIDISST DVHSEMAITA IRPRTVRLKP  60
ATTNALVGDL SSQVATSGAP VGSRSDNILQ SVEKPKVLYK PMAKLAPRKT ITLLENKGTS  120
ASDQQQEVAE TEAHVQSANE VKQQYDLKTE SQQSRLAKSG QDKKIVHATI VSENTEEVEQ  180
SLINTSNVDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH LKCPVKKKVE RSFDGQIAEI  240
VYRGEHNHPK PQPLKRNLSD GQGRAAVCNE TSKGTNNPVW SNQRPQTRVG YICRMENQND  300
VGLPIQSAYS SKAACFYDPI AAAGMQTAAR NSEDSAEGSK MLEADCDEPK TKRRKIEGQS  360
NGAGTSGESA FPYTPNQNTT DSEITGDGFR WRKYGQKVVK GSSYPRSYYR CTSPKCNVRK  420
FVERTTDDPK EFITTYEGKH NHGVPNRRPN SEASKTSSKS SAMKEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28185445177Probable WRKY transcription factor 4
2lex_A5e-28185445177Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773393.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A1U7W4620.0A0A1U7W462_NICSY; WRKY transcription factor 44 isoform X1
STRINGXP_009773393.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.13e-88WRKY family protein