PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773393.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 483aa    MW: 53536.9 Da    PI: 9.756
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32210266360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d+++ ei+Y+geHnh+k
  XP_009773393.1 210 DGYNWRKYGQKQVKGSEYPRSYYKCTHLKCPVKKKVERSF-DGQIAEIVYRGEHNHPK 266
                     9***************************************.***************85 PP
2WRKY98.34.8e-31403458358
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     Dg++WrKYGqK+vkgs +prsYYrCts++C+v+k ver+++dpk +++tYeg+Hnh
  XP_009773393.1 403 DGFRWRKYGQKVVKGSSYPRSYYRCTSPKCNVRKFVERTTDDPKEFITTYEGKHNH 458
                     9******************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-29198267IPR003657WRKY domain
SuperFamilySSF1182902.62E-25207267IPR003657WRKY domain
SMARTSM007744.1E-36208266IPR003657WRKY domain
PROSITE profilePS5081123.697210267IPR003657WRKY domain
PfamPF031066.7E-25210265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-31393461IPR003657WRKY domain
SuperFamilySSF1182901.83E-27396461IPR003657WRKY domain
PROSITE profilePS5081132.26396461IPR003657WRKY domain
SMARTSM007741.0E-34401460IPR003657WRKY domain
PfamPF031068.0E-25403458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEFIPVGSIE IRKQTKMEVN EGAKIAVARP VASRPRCPIY KSFSELLAGA IDISSTDVHS  60
EMAITAIRPR TVRLKPATTN ALVGDLSSQV ATSGAPVGSR SDNILQSVEK PKVLYKPMAK  120
LAPRKTITLL ENKGTSASDQ QQEVAETEAH VQSANEVKQQ YDLKTESQQS RLAKSGQDKK  180
IVHATIVSEN TEEVEQSLIN TSNVDRPSYD GYNWRKYGQK QVKGSEYPRS YYKCTHLKCP  240
VKKKVERSFD GQIAEIVYRG EHNHPKPQPL KRNLSDGQGR AAVCNETSKG TNNPVWSNQR  300
PQTRVGYICR MENQNDVGLP IQSAYSSKAA CFYDPIAAAG MQTAARNSED SAEGSKMLEA  360
DCDEPKTKRR KIEGQSNGAG TSGESAFPYT PNQNTTDSEI TGDGFRWRKY GQKVVKGSSY  420
PRSYYRCTSP KCNVRKFVER TTDDPKEFIT TYEGKHNHGV PNRRPNSEAS KTSSKSSAMK  480
EKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-28201461177Probable WRKY transcription factor 4
2lex_A6e-28201461177Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773393.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A1U7W4620.0A0A1U7W462_NICSY; WRKY transcription factor 44 isoform X1
STRINGXP_009773393.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.13e-88WRKY family protein