PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773281.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 353aa    MW: 40382 Da    PI: 5.0332
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
   XP_009773281.1 14 KGLWSPEEDEKLYNYITKFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding51.23e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+++++++++ lG++ W+ Ia+ ++ gRt++++k++w++yl
   XP_009773281.1  67 RGMFSQEEEDIILNLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNSYL 112
                      788*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.676961IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-24964IPR009057Homeodomain-like
SuperFamilySSF466891.36E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002495.3E-151461IPR001005SANT/Myb domain
CDDcd001677.92E-111761No hitNo description
PROSITE profilePS5129425.6562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2665117IPR009057Homeodomain-like
SMARTSM007175.2E-1566114IPR001005SANT/Myb domain
PfamPF002494.8E-1567112IPR001005SANT/Myb domain
CDDcd001673.35E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRHSVFVKE KLRKGLWSPE EDEKLYNYIT KFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPNLKRGMF SQEEEDIILN LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS YLKKKLIKQG  120
IDPNTHKPLS ENQVRNETDC TDKASMLLIP QLPSMSISAN MEQPFHLSET SVDCEANRQL  180
TEASRNQLVS KQVFDPLFLF EFQANVDPSE YNSELLGQSQ QNLRPYDHQN QIEGNPNFGF  240
CSMPSLTNFE HGHMTETEFS DSSSSRMSLL YTSEAKESSS NSSTMNNNHN AAEIQMNDML  300
GNPQDLSWDS ENKIDSLFQY PYSGIKNEED FSNNPLSSLS EDTCGENLVF HHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773281.10.0PREDICTED: myb-related protein 330-like isoform X2
TrEMBLA0A1U7W7V30.0A0A1U7W7V3_NICSY; myb-related protein 330-like isoform X2
STRINGXP_009773279.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-75myb domain protein 86