PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009773083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 28688.8 Da PI: 8.2048 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.3e-13 | 56 | 103 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr llP+ k +Ka+ L +Av+++++L XP_009773083.1 56 KSHSEAERRRRKRINGHLATLRNLLPNT----IKQTDKASLLAEAVRCVREL 103 69*************************8....678*************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.212 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.50E-11 | 56 | 105 | No hit | No description |
Pfam | PF00010 | 3.8E-10 | 56 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-14 | 56 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 57 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 59 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 7.4E-7 | 166 | 234 | No hit | No description |
SuperFamily | SSF55021 | 3.05E-6 | 166 | 234 | No hit | No description |
CDD | cd04873 | 0.00255 | 166 | 231 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MINHSFPSFY ELGGCSDSYN FLHGIINSSP EMFNVESSSV VSPRSMAEAK AIAANKSHSE 60 AERRRRKRIN GHLATLRNLL PNTIKQTDKA SLLAEAVRCV RELKKTTSEL GATMSEDDDN 120 TDDFMNYMGS NDQTTMKKFI FPSESDELNL SYCNSNNSGT LLAKATICCE DRPEIMMDLR 180 RALSTVQGKI IRAEMATVGG RIKCILWVQM LENGCREEGL GQLRRALKLV MDKANFLAQN 240 MGQDLLGNKR PRLYQC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 3e-52 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 3e-52 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773083.1 | 0.0 | PREDICTED: transcription factor bHLH30-like isoform X1 | ||||
TrEMBL | A0A1U7W3A7 | 0.0 | A0A1U7W3A7_NICSY; transcription factor bHLH30-like isoform X1 | ||||
STRING | XP_009773083.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-35 | bHLH family protein |