PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 466aa MW: 52722.8 Da PI: 6.4428 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.4e-10 | 417 | 464 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W++ E++ l +v+++G+g+W+ I +t Rt+ ++k++w++ XP_009772851.1 417 KWSALEEDTLRTGVQKYGSGNWTHILNTYRdifVVRTAGDLKDKWRNM 464 8********************************88***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.956 | 410 | 466 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-13 | 412 | 465 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0037 | 414 | 466 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-11 | 416 | 465 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.72E-16 | 417 | 465 | No hit | No description |
Pfam | PF00249 | 5.9E-8 | 417 | 464 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MDIDISRWIL EFILRQPLDD SILNALVHTL PLPNDNLNLK KALILRKLES EISNSSVTEK 60 ILELLELFEE LDHQEGIETL KEMKSAYCAV AVECTVKFLN QKGAESDKGK YFEAVKRIWK 120 KRINLMEKIE NVGFVCEELW DWRDEIEAAL WEDKCCDNVI RRSKGIFPVE AVEVFVREAK 180 ERIGPPFLDV VAETYRSDDA VREFFGGVNE QGTCRNSVRE VRKGNALPRQ KHVAFRRTRG 240 ASAGTCGGVR ISDSIELGLD ASGGQDSFLP TPEIEKAQEA LKLSSKELRA MVKDPLPDAL 300 QFAETLSSLV RDHMGHQPAE NNSDRAPHPV VASSRMDQAN GENCEANCHP SAASKPDLMN 360 RKSAAHTSER DESADELNEG SPSGVRRFTL PSPKRTEISP LKKYEFKKFT TRRKPTKWSA 420 LEEDTLRTGV QKYGSGNWTH ILNTYRDIFV VRTAGDLKDK WRNMMS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772851.1 | 0.0 | PREDICTED: uncharacterized protein LOC104223173 | ||||
Refseq | XP_016477615.1 | 0.0 | PREDICTED: uncharacterized protein LOC107799057 | ||||
TrEMBL | A0A1S4ALX6 | 0.0 | A0A1S4ALX6_TOBAC; uncharacterized protein LOC107799057 | ||||
TrEMBL | A0A1U7W6M4 | 0.0 | A0A1U7W6M4_NICSY; uncharacterized protein LOC104223173 | ||||
STRING | XP_009772851.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3774 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 1e-14 | MYB_related family protein |