PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772801.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 322aa MW: 35673.6 Da PI: 9.2522 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.3e-08 | 263 | 304 | 4 | 43 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 WT Ed+ l++a k ++++ +W++Ia+ ++ gR+ c r XP_009772801.1 263 WTSGEDLALLNALKTFPKEvamRWEKIAAAVP-GRSKAACMKR 304 ********************************.*******988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0079 | 167 | 220 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.691 | 169 | 204 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.72E-5 | 169 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.90E-4 | 170 | 217 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-8 | 253 | 314 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.155 | 255 | 304 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.0E-5 | 259 | 311 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.58E-10 | 259 | 305 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.7E-7 | 263 | 304 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.43E-7 | 263 | 309 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEFLDEDARP RFLLQSKPLQ QSNSDPETQT RSLYRPGIII SISLSLLFFA LSFLYFTIEP 60 FGSLLIWLSL SLLIGPFAPL SVTAGDIRVG LGPPIQDPPK DDLSDTEPDA KKTNRRSNRP 120 TKKVVDFEPV LPENINGSVA NSEKINGSVV NSVKINGSVA NSEKINGSSE WSEGDEELLR 180 KMMGKHPVGK PGRWEAIAEG LNGRYRVENV IKKAKELGEK KMSDEDSYQR FLKDRKAVDK 240 RSESGNEGDS ENVEVKKVVE SGWTSGEDLA LLNALKTFPK EVAMRWEKIA AAVPGRSKAA 300 CMKRMTVLKK DFRSSKSANA DT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772801.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2 | ||||
Swissprot | Q9ASQ2 | 8e-74 | MAMYB_ARATH; Transcription factor MAMYB | ||||
TrEMBL | A0A1U7W6H4 | 0.0 | A0A1U7W6H4_NICSY; dnaJ homolog subfamily C member 2 | ||||
STRING | XP_009772801.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12668 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45420.1 | 8e-73 | MYB_related family protein |