PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 491aa MW: 54120.5 Da PI: 9.0362 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.2e-17 | 165 | 214 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_009772738.1 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 214 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-9 | 165 | 214 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-16 | 165 | 223 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.794 | 166 | 222 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.73E-11 | 166 | 224 | No hit | No description |
SMART | SM00380 | 2.8E-32 | 166 | 228 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-17 | 166 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-6 | 257 | 301 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.60E-13 | 257 | 302 | No hit | No description |
SMART | SM00380 | 1.5E-12 | 258 | 306 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MLDLNVSAVS VNSNSDETDP NNNTLFFKDE YSAGTSNTTA SSSVVNAPVA GDEDSNSSSV 60 HHGSKRAHHS LSTLNFSILK SDRAIEIEDD MSTDDVLTRQ LFPVKNESQV QVQVQGTRIQ 120 GQSQCWLNLS VPESGGGAEM GINKPPTPAQ QPVKKSRRGP RSRSSQYRGV TFYRRTGRWE 180 SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNITDYEEDM EQMKNLSKEE 240 FVQVLRRQST GFSRGNSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAVTNFE 300 PSTYEREIKE DNKDGSGQNL DLNLWISPPL AGPKRDEIGR NVPFNFGARE MVIGRRLEIE 360 NSSTAPQGAP TASKLSLLTG VYPGFSPHNM EGAMAKVEAT SSPGFPNWAW KIHSQGLVTP 420 VPVFSSAASS GFSTTTTLYP NTLLLPSNQL RLSNTLPSPL TLVKRNCNNN LKKWEYILIQ 480 LAAGIKSVNE V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772738.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | Q9SK03 | 2e-92 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A1U7W298 | 0.0 | A0A1U7W298_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
STRING | XP_009772737.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 2e-90 | related to AP2.7 |