PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772710.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 319aa    MW: 36024.1 Da    PI: 4.7234
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-082652982255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yp++ e+  LA+++gL+ +q+ +WF N+R ++
  XP_009772710.1 265 WPYPTEGEKICLAESTGLDPKQINNWFINQRKRH 298
                     59*****************************885 PP
2ELK40.27e-14218239122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     E+K+ L+rKYsgy++sLkqEF+
  XP_009772710.1 218 EIKDKLMRKYSGYISSLKQEFC 239
                     89*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-1478122IPR005540KNOX1
PfamPF037903.0E-1880116IPR005540KNOX1
SMARTSM012564.6E-18128179IPR005541KNOX2
PfamPF037918.5E-21134178IPR005541KNOX2
PfamPF037894.0E-11218239IPR005539ELK domain
SMARTSM011882.4E-7218239IPR005539ELK domain
PROSITE profilePS5121310.964218238IPR005539ELK domain
PROSITE profilePS5007111.531238301IPR001356Homeobox domain
SuperFamilySSF466891.33E-19240311IPR009057Homeodomain-like
SMARTSM003896.7E-11240305IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-28243302IPR009057Homeodomain-like
CDDcd000863.64E-11250302No hitNo description
PfamPF059201.7E-16258297IPR008422Homeobox KN domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEEMYEFGSS SSAVYSVDDH LQPPYFGSPP AFCDELLPVG FGSGNMSSVC SESSAANSVV  60
DKSGTSSSNL QLEDHHETNI RAKISSHPLY PKLLRTYIDC RKVGAPSEIV DMLDNINIVH  120
ENDLYRRSNR LITGDSELDD FMGTYCDVLA KFKSDLERPF NEATTFLNDI QIQLTNLCTT  180
PVTPSSNISD EGAAGLEEEE DTSGGGGNTN DMCRSENEIK DKLMRKYSGY ISSLKQEFCK  240
KNKKGKLPKE ARQILLDWWT THYKWPYPTE GEKICLAEST GLDPKQINNW FINQRKRHWK  300
PSENMQFADM ESIYGHFSE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0257130.0AB025713.1 Nicotiana tabacum mRNA for homeobox 9, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772710.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ84JS63e-89KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1U7WEQ10.0A0A1U7WEQ1_NICSY; homeobox protein knotted-1-like 2
STRINGXP_009772710.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.16e-87KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]