PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 35788.2 Da PI: 9.7249 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.7e-11 | 20 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l +v ++G+g W+tI + R+ ++k++w++ XP_009772620.1 20 KLKWTPEEEVALRAGVLKYGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRNM 71 689**********************************88***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.51E-15 | 17 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-6 | 19 | 74 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.41 | 20 | 72 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-13 | 20 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-7 | 20 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.81E-17 | 22 | 72 | No hit | No description |
SMART | SM00526 | 2.1E-12 | 133 | 198 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.99E-16 | 134 | 212 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 21.879 | 135 | 203 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 5.4E-14 | 138 | 204 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.0E-7 | 140 | 196 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MVNGLFWELH FLDALMGAPK LKWTPEEEVA LRAGVLKYGP GKWRTILKDP EFSGVLYLRS 60 NVDLKDKWRN MTVMANGWGS REKAKLALKR MIQAPMQGES SAAVTSEAES DAEIPEAWPA 120 TTSRGSPQHG GSRRSILRLD NLIMEAISNL NEPGGSYQAT ISTYIEDQYW ETPNIRRLLS 180 AKLKYLTATG KLIKMKRKYK VAPKLTFANK RRNLPLPLLD SSQRICSKVD QDDINMLTRS 240 QIDLDLEKMK NMSPQEAAAA AAQAVAEADT ATAEAAEAAR KAEAAAAEAE AAQAFAEAAM 300 KTLQERSIPR MLVNMVKKFV GME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772620.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X1 | ||||
Refseq | XP_016511127.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X2 | ||||
Swissprot | Q8VWK4 | 1e-88 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S4DCG0 | 0.0 | A0A1S4DCG0_TOBAC; telomere repeat-binding factor 1-like isoform X2 | ||||
TrEMBL | A0A1U7WEG1 | 0.0 | A0A1U7WEG1_NICSY; telomere repeat-binding factor 1-like isoform X1 | ||||
STRING | XP_009772620.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2864 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-82 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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