PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772614.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BES1
Protein Properties Length: 694aa    MW: 77547.9 Da    PI: 5.5935
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772614.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822139.82.7e-43682131136
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                     ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+ + + +++g+ +++ ++ss++
  XP_009772614.1  68 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSHSQVTGATGGTPTTMVTSSSSH 162
                     6899******************************************************************5555554555555555544444433 PP

          DUF822  96 ..........sslkssalaspvesysaspksssfpspssldsislasaasl 136
                               ++ + s ++  +++++++ ks+ +p +s +ds s+a ++++
  XP_009772614.1 163 iptqhtppasLKGTPSGFQNTADHSACQVKSVFIPTSSPYDSSSTARSQTS 213
                     211000010233445778888899999999999999999999887755443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.2E-3769207IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.93E-181251688IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.1E-197254688IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.2E-107260680IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-70291305IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-70312330IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-70334355IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-8417426IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.4E-70427449IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-70500519IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-70534550IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-70551562IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-70569592IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-8572582IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.4E-70609631IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.6E-8660674IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.6E-8675689IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MASEMQRYDT NEDDEEMDVK EEDDEDDDDE DKNGTFNAMA GFDGAHGSSS SNRFQHHQQY  60
QEPPTPQGGS RRCRPLEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA  120
LAREAGWVVL PDGTTFPSKS HSQVTGATGG TPTTMVTSSS SHIPTQHTPP ASLKGTPSGF  180
QNTADHSACQ VKSVFIPTSS PYDSSSTARS QTSAMVADGQ DTQNDPFLVG SGDSLDKQVI  240
DIHTKLQKRD FAGTPYIPVY VMLPLGVINM KSELVDADGL VKQLRVLKSI NVDGVMVDCW  300
WGIVEANAPQ DYNWNGYKRL FQVVREHKLK IKVVMSFHEC GGNIGDDVCI PLPHWVSEIG  360
RSNPDIYFTD RAGRRNPECL SWGIDKERVL KGRTAVEVYF DYMRSFRVEF DEFFEDGIIS  420
MVEVGLGPCG ELRYPSNPVK HGWRYPGVGE FQCYDQYLLK SLRKAAEARG HSFWARGPDN  480
AGSYNSQPQE TGFFCDGGDY DGYYGRFFLN WYSQVLVDHA DRVLSLAKLA FDGTCIAAKL  540
SGIHWWYKTS SHAAELTAGF YNPSNRDGYV AIAAMLKKHG AALNFKCAEM SMLEQAVDFS  600
EALGDPEGLA WQVLNAAWDV SLPVCSENAL LCHDRGGYNC LLEKAKLLND PDGKHIFAFT  660
YLRLGPLLID GQNFMEFERF VKRMHGEAVL EFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-14925668711444BETA-AMYLASE
1byb_A1e-14925668711444BETA-AMYLASE
1byc_A1e-14925668711444BETA-AMYLASE
1byd_A1e-14925668711444BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ7183730.0AJ718373.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT43-4-510, cultivar Bright Yellow 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772614.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1U7WD880.0A0A1U7WD88_NICSY; Beta-amylase
STRINGXP_009772614.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]