PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009772593.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 510aa MW: 56685.3 Da PI: 6.8356

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009772593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.4e-10	205	245	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le+ + ++Le+e XP_009772593.1 205 AKTLRRLAQNREAARKSRLRKKAYVQQLETsriRLAQLEQE 245 6889************************9733355555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.9E-6	202	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	204	248	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-8	204	250	No hit	No description
Pfam	PF00170	2.9E-7	205	245	IPR004827	Basic-leucine zipper domain
CDD	cd14708	9.86E-21	206	256	No hit	No description
SuperFamily	SSF57959	1.69E-6	206	248	No hit	No description
PROSITE pattern	PS00036	0	209	224	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.3E-32	288	363	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MESQRIGESG SLSAESGPSH HHHNMSYALF RGLNPPNTSF MYHSSPNNQE PPAFDFGELE 60 EAIVLQGVKM SNDEAAKASL YATTNRPAAT LEMFPSWPTR FHHTPRGSSK SGGEESSNSG 120 SALNTYSSRG EPHLEPESPI SGKPSSDYQS LEQNQQQQLQ LPQQQLQEMA SDSPRTGVSH 180 SEPASKSNYE KRKGVGSTSD RVVDAKTLRR LAQNREAARK SRLRKKAYVQ QLETSRIRLA 240 QLEQELQRAR SQGLFMGGAA AAGANISSAG AAMFDMEYSR WLDDDQRHIS ELRTALQAHL 300 GDGDLRIIVD GYIAHYDEIF QLKGVAAKSD VFHLITGMWT TPAERCFLWM GGFRPSELIK 360 MLIAQLDPLT QQQVVGIYSL QQSSQQAEEA LSQGLEQLQQ SLIETVANGS LNDGMHHMAV 420 ALGKLANLEG FVRQADNLRQ QTLHQLHRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP 480 RETMMADDNS CQTTTELQMI QASQHHFSNM

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MESQRIGESG SLSAESGPSH HHHNMSYALF RGLNPPNTSF MYHSSPNNQE PPAFDFGELE  60
EAIVLQGVKM SNDEAAKASL YATTNRPAAT LEMFPSWPTR FHHTPRGSSK SGGEESSNSG  120
SALNTYSSRG EPHLEPESPI SGKPSSDYQS LEQNQQQQLQ LPQQQLQEMA SDSPRTGVSH  180
SEPASKSNYE KRKGVGSTSD RVVDAKTLRR LAQNREAARK SRLRKKAYVQ QLETSRIRLA  240
QLEQELQRAR SQGLFMGGAA AAGANISSAG AAMFDMEYSR WLDDDQRHIS ELRTALQAHL  300
GDGDLRIIVD GYIAHYDEIF QLKGVAAKSD VFHLITGMWT TPAERCFLWM GGFRPSELIK  360
MLIAQLDPLT QQQVVGIYSL QQSSQQAEEA LSQGLEQLQQ SLIETVANGS LNDGMHHMAV  420
ALGKLANLEG FVRQADNLRQ QTLHQLHRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP  480
RETMMADDNS CQTTTELQMI QASQHHFSNM

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772593.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_009772594.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Refseq	XP_009772595.1	0.0	PREDICTED: transcription factor TGA2-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1U7WED6	0.0	A0A1U7WED6_NICSY; transcription factor TGA2-like isoform X1
STRING	XP_009772593.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-178	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]