PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772463.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 217aa    MW: 24098.1 Da    PI: 8.689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-2090139356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+W+AeIrdp     +  +r++lg+f taeeAa+a+++ + +++ge
  XP_009772463.1  90 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFITAEEAARAYDKKAIEFRGE 139
                     9*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-2289148IPR016177DNA-binding domain
SMARTSM003801.4E-3689152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3289147IPR001471AP2/ERF domain
PROSITE profilePS5103223.90789146IPR001471AP2/ERF domain
CDDcd000182.02E-3090148No hitNo description
PRINTSPR003671.3E-1190101IPR001471AP2/ERF domain
PfamPF008474.8E-1290139IPR001471AP2/ERF domain
PRINTSPR003671.3E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVSALRHVIC GADGKTDGEA AQLIREVENA SAATSASILP RRSIVEPTVS AATYLACHIG  60
SSTTTSFHVK RENLELQKGR RRRRNTKKEY RGVRQRPWGK WAAEIRDPHK AQRVWLGTFI  120
TAEEAARAYD KKAIEFRGEK AKTNFPISEY AAAATTVTDH NNKLPMVVEE LQVQKGVNNG  180
IVAGDDNGES NVQTGDDFWD TLEDDGLVKW ITKDMSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2188147464ATERF1
3gcc_A1e-2188147464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497545.11e-162PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S4C8T01e-160A0A1S4C8T0_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009772463.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.28e-31ERF family protein