PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772294.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 270aa    MW: 30042.1 Da    PI: 8.7186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv++++ +G g+W++ ++  g+ R++k+c++rw +yl
   XP_009772294.1 14 KGAWTKEEDQRLVNYIRSHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding57.33.5e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEd+l+++++ +lG++ W+ Ia +++ gRt++++k++w+++
   XP_009772294.1  67 RGNFTEEEDDLIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.572961IPR017930Myb domain
SuperFamilySSF466893.16E-3013108IPR009057Homeodomain-like
SMARTSM007178.7E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001671.17E-101661No hitNo description
PROSITE profilePS5129428.02762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2865117IPR009057Homeodomain-like
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1667111IPR001005SANT/Myb domain
CDDcd001671.81E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVNYIR SHGEGCWRSL PKAAGLQRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDDLIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG  120
LDPHTHRPLN TATATTAATA TATKNICLDF RNTSVAATPL SLNDQNPTNY SSSLEEETKC  180
SSSTTEERSP PLEPAAAPVA ATEKSSGEVM INLELSIGLP CQAMVAQRRP TVAATELVER  240
AVCLCWQIGS QRGQQFCGKC QTTNGFYRYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30141167108B-MYB
1h8a_C6e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772294.10.0PREDICTED: myb-related protein 330-like
RefseqXP_016495904.10.0PREDICTED: myb-related protein 330-like
SwissprotP813951e-110MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A1S4C4A40.0A0A1S4C4A4_TOBAC; myb-related protein 330-like
TrEMBLA0A1U7WCB10.0A0A1U7WCB1_NICSY; myb-related protein 330-like
STRINGXP_009772294.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-88myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]