PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772248.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 415aa    MW: 46416.8 Da    PI: 6.6339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.17.3e-1968354129
             NAM  54 eekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrle 129
                     + k+wyf s++++ky++g ++nr  + ++gyW+  g+d  +++ +g+l+g +ktL + +g ++++ ++t+W+mheyrle
  XP_009772248.1   6 QAKKWYFVSPASNKYTEGGQSNRvsVNDDGYWEPCGTDSLIHK-DGKLIGYRKTLNYIEGkHDKDMKRTEWLMHEYRLE 83 
                     6789*******************633559***********999.99************9945566789*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.338198IPR003441NAC domain
PfamPF023651.6E-9482IPR003441NAC domain
SuperFamilySSF1019414.45E-21698IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MHHPSQAKKW YFVSPASNKY TEGGQSNRVS VNDDGYWEPC GTDSLIHKDG KLIGYRKTLN  60
YIEGKHDKDM KRTEWLMHEY RLEGSRDMQR VFCKLFKSNN KLMEAEEKEA TKFAAPNDGV  120
SSADPTIQGP EKANDITNDK GPSNGHGRDL LPMPDTDQGT TIPTPMPQHV QGTTLTRTGR  180
QKATNNVVRN KRPRRKRDSH PPPASHQGLM MPHLPNANSQ PQRDQGIRLP PPLPQNDERK  240
TFPISTGPYK ANNGVVLTDN GPSNSLVVPF CPEYILDEPS FDWTVANSWL QDGTMPPSRP  300
QHGQHTILPL TGNNANADEV SVMGLTLNHL RDAQDLPFSV ELPKLPSVQA SPRGSHENEA  360
AVAPRYDGWP LYTAETRLLP FDGPFESLTE EELAFFDNPD PGYPEAFENK KEAKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-14810071167NO APICAL MERISTEM PROTEIN
1ut4_B9e-14810071167NO APICAL MERISTEM PROTEIN
1ut7_A9e-14810071167NO APICAL MERISTEM PROTEIN
1ut7_B9e-14810071167NO APICAL MERISTEM PROTEIN
3swm_A9e-14810074170NAC domain-containing protein 19
3swm_B9e-14810074170NAC domain-containing protein 19
3swm_C9e-14810074170NAC domain-containing protein 19
3swm_D9e-14810074170NAC domain-containing protein 19
3swp_A9e-14810074170NAC domain-containing protein 19
3swp_B9e-14810074170NAC domain-containing protein 19
3swp_C9e-14810074170NAC domain-containing protein 19
3swp_D9e-14810074170NAC domain-containing protein 19
4dul_A9e-14810071167NAC domain-containing protein 19
4dul_B9e-14810071167NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191195RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772246.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X1
RefseqXP_009772247.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X1
RefseqXP_016500362.10.0PREDICTED: uncharacterized protein LOC107818826 isoform X1
RefseqXP_016500364.10.0PREDICTED: uncharacterized protein LOC107818826 isoform X1
TrEMBLA0A1S4CGQ40.0A0A1S4CGQ4_TOBAC; uncharacterized protein LOC107818826 isoform X1
TrEMBLA0A1U7W4W40.0A0A1U7W4W4_NICSY; uncharacterized protein LOC104222681 isoform X1
STRINGXP_009772246.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.14e-17NAC family protein