PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 493aa MW: 55193.6 Da PI: 6.237 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.6 | 6.3e-29 | 41 | 161 | 11 | 129 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvgl 102 de l+ +yL kk+ +++++ +i+evd++ ++P++L +++ ++ k+wyf s++++ky++g ++nr + ++gyW+ g+d +++ +g+l+g XP_009772246.1 41 DEGLIIHYLDKKMMDQPFPN-YTIHEVDVFLYHPHQLSqMHHPSQAKKWYFVSPASNKYTEGGQSNRvsVNDDGYWEPCGTDSLIHK-DGKLIGY 133 999**************999.67**************8446666888********************633559***********999.99***** PP NAM 103 kktLvfykg.rapkgektdWvmheyrle 129 +ktL + +g ++++ ++t+W+mheyrle XP_009772246.1 134 RKTLNYIEGkHDKDMKRTEWLMHEYRLE 161 *******9945566789*********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 34.63 | 31 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-14 | 41 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-34 | 41 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MEGKGKQDST ANVTNVNKNC PDVGVIPKQE VLVDDQLSGA DEGLIIHYLD KKMMDQPFPN 60 YTIHEVDVFL YHPHQLSQMH HPSQAKKWYF VSPASNKYTE GGQSNRVSVN DDGYWEPCGT 120 DSLIHKDGKL IGYRKTLNYI EGKHDKDMKR TEWLMHEYRL EGSRDMQRVF CKLFKSNNKL 180 MEAEEKEATK FAAPNDGVSS ADPTIQGPEK ANDITNDKGP SNGHGRDLLP MPDTDQGTTI 240 PTPMPQHVQG TTLTRTGRQK ATNNVVRNKR PRRKRDSHPP PASHQGLMMP HLPNANSQPQ 300 RDQGIRLPPP LPQNDERKTF PISTGPYKAN NGVVLTDNGP SNSLVVPFCP EYILDEPSFD 360 WTVANSWLQD GTMPPSRPQH GQHTILPLTG NNANADEVSV MGLTLNHLRD AQDLPFSVEL 420 PKLPSVQASP RGSHENEAAV APRYDGWPLY TAETRLLPFD GPFESLTEEE LAFFDNPDPG 480 YPEAFENKKE AKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-19 | 41 | 178 | 30 | 170 | NAC domain-containing protein 19 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 269 | 273 | RPRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772246.1 | 0.0 | PREDICTED: uncharacterized protein LOC104222681 isoform X1 | ||||
Refseq | XP_009772247.1 | 0.0 | PREDICTED: uncharacterized protein LOC104222681 isoform X1 | ||||
Refseq | XP_016500362.1 | 0.0 | PREDICTED: uncharacterized protein LOC107818826 isoform X1 | ||||
Refseq | XP_016500364.1 | 0.0 | PREDICTED: uncharacterized protein LOC107818826 isoform X1 | ||||
TrEMBL | A0A1S4CGQ4 | 0.0 | A0A1S4CGQ4_TOBAC; uncharacterized protein LOC107818826 isoform X1 | ||||
TrEMBL | A0A1U7W4W4 | 0.0 | A0A1U7W4W4_NICSY; uncharacterized protein LOC104222681 isoform X1 | ||||
STRING | XP_009772246.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15035 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-23 | NAC-like, activated by AP3/PI |