PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772158.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 357aa    MW: 41045.8 Da    PI: 6.7171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
   XP_009772158.1 14 KGLWSPEEDEKLSNYITKFGVGSWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.54.1e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
   XP_009772158.1  67 RGMFSPDEEDRIISLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24664IPR009057Homeodomain-like
PROSITE profilePS5129424.269965IPR017930Myb domain
SuperFamilySSF466891.2E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002491.7E-141461IPR001005SANT/Myb domain
CDDcd001671.16E-91761No hitNo description
Gene3DG3DSA:1.10.10.609.0E-2665117IPR009057Homeodomain-like
SMARTSM007174.5E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.22166116IPR017930Myb domain
PfamPF002496.1E-1467110IPR001005SANT/Myb domain
CDDcd001672.89E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRHSCCVKQ KLRKGLWSPE EDEKLSNYIT KFGVGSWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SPDEEDRIIS LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLIKQG  120
IDPNTHKLLS EDQVKDEENC TNKTSMLQIP SAGLMDQPFH LTNSRSFNSE VNGQLTEASK  180
DEFVSKQVFD LLYIHEFQAN VNPNGYNSEI LAQYQQNMRP NDHRQSEFNR NPNYGFCSET  240
SITKLEHGQI TETDFASSST SRMSSSNSSN VRRYQNTAEI QMPRMLENSE DLTWEVENKI  300
ESLFQYPYIS IKNEELKSSP RQEREFYGHS SGDFMSNPLS SLTEELNGAT VNVFQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-41HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772158.10.0PREDICTED: transcription repressor MYB4-like
SwissprotQ8VZQ24e-74MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A1U7W0M90.0A0A1U7W0M9_NICSY; transcription repressor MYB4-like
STRINGXP_009772158.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-77myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]