PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009772110.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 228aa MW: 25825 Da PI: 5.395

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009772110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.4e-30	53	111	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+ XP_009772110.1 53 SDCWSWRKYGQKPIKGSPYPRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 111 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-31	43	113	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-26	49	113	IPR003657	WRKY domain
SMART	SM00774	5.4E-35	52	112	IPR003657	WRKY domain
PROSITE profile	PS50811	31.066	53	113	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	54	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGKSRPPKSE SKTSRLLEPQ FVAPKKRKMT QKVVITVQME ANAIKQKNEG PPSDCWSWRK 60 YGQKPIKGSP YPRGYYKCSS SKGCSAKKQV ERSSTDSSLF IITYTSTHNH PGPNLPYKDS 120 PLNPVTQDSP MTLQQDQEPI TDRHVSLEDN DGILVQQEEN QFTDKLLGTI SYDDFLPLSY 180 PQLMNFPKSE LSEENDFYDE LGELQLPPSF TSFAGIFEET ILVDPSYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-21	53	113	17	79	Disease resistance protein RRS1
5w3x_D	4e-21	53	113	17	79	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	2e-65	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772110.1	1e-169	PREDICTED: probable WRKY transcription factor 65
Refseq	XP_016486611.1	1e-169	PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A1S4BCR7	1e-167	A0A1S4BCR7_TOBAC; probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A1U7WD10	1e-167	A0A1U7WD10_NICSY; probable WRKY transcription factor 65
STRING	XP_009772110.1	1e-168	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11281	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-22	WRKY DNA-binding protein 35