PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 228aa    MW: 25825 Da    PI: 5.395
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-3053111259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+
  XP_009772110.1  53 SDCWSWRKYGQKPIKGSPYPRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 111
                     699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3143113IPR003657WRKY domain
SuperFamilySSF1182907.85E-2649113IPR003657WRKY domain
SMARTSM007745.4E-3552112IPR003657WRKY domain
PROSITE profilePS5081131.06653113IPR003657WRKY domain
PfamPF031062.3E-2554111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGKSRPPKSE SKTSRLLEPQ FVAPKKRKMT QKVVITVQME ANAIKQKNEG PPSDCWSWRK  60
YGQKPIKGSP YPRGYYKCSS SKGCSAKKQV ERSSTDSSLF IITYTSTHNH PGPNLPYKDS  120
PLNPVTQDSP MTLQQDQEPI TDRHVSLEDN DGILVQQEEN QFTDKLLGTI SYDDFLPLSY  180
PQLMNFPKSE LSEENDFYDE LGELQLPPSF TSFAGIFEET ILVDPSYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-21531131779Disease resistance protein RRS1
5w3x_D4e-21531131779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-65HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772110.11e-169PREDICTED: probable WRKY transcription factor 65
RefseqXP_016486611.11e-169PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBLA0A1S4BCR71e-167A0A1S4BCR7_TOBAC; probable WRKY transcription factor 65 isoform X1
TrEMBLA0A1U7WD101e-167A0A1U7WD10_NICSY; probable WRKY transcription factor 65
STRINGXP_009772110.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112812025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-22WRKY DNA-binding protein 35