PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 300aa MW: 33874.2 Da PI: 6.5762 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.8e-08 | 249 | 282 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + XP_009772031.1 249 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 282 469*****************************87 PP | |||||||
2 | ELK | 26.3 | 1.7e-09 | 203 | 224 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ XP_009772031.1 203 ELKIELKQGFRSRIEDVREEIL 224 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.7E-18 | 36 | 80 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.9E-16 | 38 | 79 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.0E-25 | 92 | 147 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.6E-18 | 95 | 146 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.184 | 203 | 223 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 223 | 286 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-16 | 225 | 290 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-10 | 225 | 290 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.71E-11 | 226 | 287 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 230 | 288 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 243 | 282 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MQEQGVGLMG SSSGGGIGGL GALGDVSMVI SEDNQRQLKG EIATHPLYEQ LLSAHVACLR 60 VATPIDQLPL IEAQFSQSHH LLRSYASQHH SHSLSPHERQ ELDNFLAQYL LVLCSFKEQL 120 QQHVRVHAVE AVMACREIEQ NLQLLTGATL GEGSGATMSD DEDELQMDFS LDQSGGDAHD 180 LMGMGFGLPT ESERSLMERV RQELKIELKQ GFRSRIEDVR EEILRKRRAG KLPGDTTTVL 240 KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS VTSLKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 226 | 282 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 299 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ477690 | 0.0 | KJ477690.1 Solanum tuberosum class II knox protein (HOX2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772031.1 | 0.0 | PREDICTED: homeobox protein HD1 | ||||
Refseq | XP_016464388.1 | 0.0 | PREDICTED: homeobox protein HD1-like | ||||
Swissprot | Q9FPQ8 | 1e-170 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A1S3ZJA0 | 0.0 | A0A1S3ZJA0_TOBAC; homeobox protein HD1-like | ||||
TrEMBL | A0A1U7W4A3 | 0.0 | A0A1U7W4A3_NICSY; homeobox protein HD1 | ||||
STRING | XP_009772031.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6773 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-168 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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