PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009771992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 507aa MW: 56875.1 Da PI: 4.2823 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.7 | 1.2e-32 | 26 | 104 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++k+++ ewyfFs dkky +g r+nrat++gyWk+tgkd++v+++k+++vg+kktLv+++grapkg++t+Wvmheyrl XP_009771992.1 26 RLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYWKTTGKDRAVHRNKSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 104 4566778**********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.033 | 1 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-38 | 27 | 127 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-15 | 33 | 104 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MSNCEPLAVG DFSAINEKLA ITCKSRLKTR DLEWYFFSVL DKKYGNGART NRATEKGYWK 60 TTGKDRAVHR NKSQVVGMKK TLVYHSGRAP KGQRTNWVMH EYRLIDEELD RAGIPQDAFV 120 VCRVFQKSGA GPKNGEQYGA PFIEEEWEED ELQVLPKDEA AEEFVFDDDI YLDGIELDQI 180 LGTETTLNSA PLPLDYCYGE NGSSEETNNS SDAQNWLQQP DELKPIDLAV QQNVDVDPVM 240 HEYIGESSKN VNSEDVDYLL HEPTVNATDD LQFKEEAFLE ANDLSNPIEV DSSGFDMLEE 300 YLTFFDANDD FQHMGFDPSV LFGNDDQISD QALLAEKNIG EVTQQFIAPN EGLGENKNDF 360 ASSSKLEPTK FGSDRQYPFM KKASQMLGNI HAPPAFASEF PTKDATLRLN SLSQSSSSVQ 420 VTAGFQIRDT TVGSNGTGWP LGKYADYNII LSFGISRRSD DSAMESFYSI HPGKTTSIIS 480 RGWFYYLFFS FLMLCMSFKI GTIICAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-27 | 33 | 133 | 72 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-27 | 33 | 133 | 72 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-27 | 33 | 133 | 72 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-27 | 33 | 133 | 72 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-27 | 33 | 133 | 75 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-27 | 33 | 133 | 72 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-27 | 33 | 133 | 72 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013747 | 0.0 | BT013747.1 Lycopersicon esculentum clone 132610F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771992.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X2 | ||||
Refseq | XP_016454401.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X2 | ||||
TrEMBL | A0A1S3YQB4 | 0.0 | A0A1S3YQB4_TOBAC; NAC domain-containing protein 78-like isoform X2 | ||||
TrEMBL | A0A1U7VW25 | 0.0 | A0A1U7VW25_NICSY; NAC domain-containing protein 78-like isoform X2 | ||||
STRING | XP_009771991.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 3e-95 | NAC domain containing protein 53 |