PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771958.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 299aa    MW: 34328.2 Da    PI: 10.3384
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.66e-3198187296
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +fqr+ws+eDei++L G++++++ ++ sps d +afy fvk++++++vsk+ql +K+++LK Kf k+v+k       +fsk+h+++ f+ls++iW
  XP_009771958.1  98 NFQRIWSNEDEIAVLEGMLEYASARNISPSVDYNAFYIFVKDKLQVEVSKNQLKNKVKNLKSKFMKNVAK-----RGAFSKPHEENLFKLSQRIW 187
                     89*******************************************************************9.....679***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-2799187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MILVLKSSVR VKELPLRQRF FRREWKGSAE AESGVLRRSR EDLQKMAKNH TDNSLKESDK  60
DWTPTSSKSI SSESHSNNRK KRTMKNSGKK GVSEAVNNFQ RIWSNEDEIA VLEGMLEYAS  120
ARNISPSVDY NAFYIFVKDK LQVEVSKNQL KNKVKNLKSK FMKNVAKRGA FSKPHEENLF  180
KLSQRIWYDD NQIAKEKGAA KVYDKVPKVG KKIVAKEKNN LCAGSSERYS SLVLYGGSAA  240
DLEDWFRQNP GLVSKEQRHE VLIKSHSLKI ARAEQQLNEI TLMEEQVNFS PTCFQFCLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771958.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1U7W0150.0A0A1U7W015_NICSY; mediator-associated protein 1-like
STRINGXP_009771958.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-13DNA-binding storekeeper protein-related transcriptional regulator