PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771833.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 756aa    MW: 83540.9 Da    PI: 5.4393
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-1964119156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +rk  ++t++q+ eLe++F++n++p+++ r eL kkl+++ +qVk+WFqNrR+++k
  XP_009771833.1  64 KRKYSRHTANQILELETAFKENPHPNEKVRLELGKKLSMDSKQVKFWFQNRRTQMK 119
                     79999************************************************998 PP
2START166.61.8e-522694912205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++el+ +a+ +ep+Wv+s     e +n +e+ ++f++  +     + +ea ra+g v+ ++ +lve+l+d + +W e++     k ++++
  XP_009771833.1 269 LALAAMNELLGLAEIGEPLWVRSLdgggETLNLEEYARSFTPCTGmkpghFATEATRATGTVIVNSLTLVETLMDMS-RWVEMFScivgKTSVVN 362
                     6899************************************99888999999**************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     vi         + lql+++e+q +s lvp R+  f+R+++q+ +g+w++vdvSvd  q+ ++ +++  +++lpSg+++++++ng+skvtw+eh++
  XP_009771833.1 363 VIPGStcgswsSNLQLIQTEFQIISDLVPaREMKFLRFCKQQAEGVWAVVDVSVDTVQESSQPHEIGNCRRLPSGCIVQDMPNGYSKVTWIEHME 457
                     **9999******************************************************9999******************************* PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                     + +++ h l+r+lv++gl +ga++w+atlqrq e
  XP_009771833.1 458 YYENVLHHLYRPLVRNGLGFGAQRWMATLQRQSE 491
                     *******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1851119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1860128IPR009057Homeodomain-like
PROSITE profilePS5007117.45961121IPR001356Homeobox domain
SMARTSM003892.8E-1663125IPR001356Homeobox domain
CDDcd000862.88E-1664121No hitNo description
PfamPF000461.9E-1664119IPR001356Homeobox domain
PROSITE profilePS5084840.138259495IPR002913START domain
SuperFamilySSF559613.16E-30261491No hitNo description
CDDcd088752.75E-104263491No hitNo description
SMARTSM002341.0E-39268492IPR002913START domain
PfamPF018529.0E-45269490IPR002913START domain
SuperFamilySSF559614.03E-11517748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MSFVKPKMES HSDMSEKGES SNNVVMGRPK EEDESESRSN GDNFLNGVAS EDEPDSVLSN  60
SSRKRKYSRH TANQILELET AFKENPHPNE KVRLELGKKL SMDSKQVKFW FQNRRTQMKS  120
HLERHENGIL KQENDRLRIE HIAMQGAMKH PICNRCRNQA IIADINVEEH QTKIEYERLK  180
EEVKRISVLA DKLLGPLSSL EGSMASVIAN PAFGLPEGIN GFGGINYANA ASPMGLDFDN  240
GLSSPPPVII SRSLANVDAS YDKSMLMDLA LAAMNELLGL AEIGEPLWVR SLDGGGETLN  300
LEEYARSFTP CTGMKPGHFA TEATRATGTV IVNSLTLVET LMDMSRWVEM FSCIVGKTSV  360
VNVIPGSTCG SWSSNLQLIQ TEFQIISDLV PAREMKFLRF CKQQAEGVWA VVDVSVDTVQ  420
ESSQPHEIGN CRRLPSGCIV QDMPNGYSKV TWIEHMEYYE NVLHHLYRPL VRNGLGFGAQ  480
RWMATLQRQS EFLAMLMSSV DSPVVCSSGQ TSMAMLAQRM TRNFCAGVCA TIHKWESIQQ  540
ANGEDAKLMM RKNIGDPGEP IGVVLSATKT IWLPVKQQRL LDFLLNEQTR SQWDILFNSG  600
PMQQLVHIAK GQNIDNSISL FRANVDAISD SENNMLILQD TCTDATGSLI VYATIDAVDM  660
DVVMNGGDSS SVAFLPSGIA IVPDCFQDYS GANNCNVETS WEKDNGFSGT GSLVTIGFQV  720
LVNSSPAEKL SMESVQKVNN LISHTIHGIK ASFKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771833.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1U7VZN60.0A0A1U7VZN6_NICSY; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGXP_009771833.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]