PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771801.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 716aa    MW: 80805.6 Da    PI: 6.519
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-182877756
                    --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++ eq+++Le++F+++++p++++r++L++++gL+ +q+k+WFqN+R++ k
  XP_009771801.1 28 HSVEQIQQLETFFKECPHPDENQRRQLSREIGLDPKQIKFWFQNKRTQTK 77
                    688*******************************************9987 PP
2START116.15.1e-372404565205
                     HHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   5 eaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     +a++e v + + +ep W ks          e +++ + k+ +  +     ++e +++sgvv+m++ +l +++ld   ++ ++++    ka t+ev
  XP_009771801.1 240 TATDEIVELFQMNEPIWIKSQidgryfiNRESYEKIYPKPNQ--AyksaARIESSKESGVVTMTAIELIQIFLDPV-RYMNMFPtivtKARTIEV 331
                     6788999999***********999988888888888888855..345899**************************.66666666666******* PP

                     ECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  85 issg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     +++    g +qlm+ +l  lsplv  Rdf f+R++rql   +w+ vdvS d+ ++ + s +   + ++pSg++i++++ng+s vtw+ehv+++++
  XP_009771801.1 332 VDTEnfgGSVQLMYEKLHILSPLVGaRDFFFIRCCRQLDPTTWTMVDVSFDNLREIQ-SGGPSQSWKFPSGCVIQDLGNGKSMVTWLEHVHVDDK 425
                     ***9999************************************************99.88999999****************************9 PP

                     XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 176 lp.hwllrslvksglaegaktwvatlqrqce 205
                     +    l+r lv  ++ +gak+w  tlqr  e
  XP_009771801.1 426 THtNRLYRDLVCGRQTFGAKRWIITLQRMSE 456
                     98799**********************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17973IPR009057Homeodomain-like
SuperFamilySSF466891.46E-161278IPR009057Homeodomain-like
PROSITE profilePS5007116.0011979IPR001356Homeobox domain
SMARTSM003892.8E-151983IPR001356Homeobox domain
CDDcd000862.89E-152777No hitNo description
PfamPF000461.1E-152877IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084832.861227460IPR002913START domain
CDDcd088751.18E-84231456No hitNo description
SuperFamilySSF559615.36E-24232458No hitNo description
SMARTSM002342.9E-19236457IPR002913START domain
PfamPF018524.4E-32240456IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-7290420IPR023393START-like domain
SuperFamilySSF559615.22E-12484679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MDDSGNEQIG ESSSSRKRSR RQKLCNRHSV EQIQQLETFF KECPHPDENQ RRQLSREIGL  60
DPKQIKFWFQ NKRTQTKALS ERADNNILRT ENERFHCENM AMREALKNII CPHCDGPPPG  120
EEERKRNLEK MKMANQRLRD EHERISNLIS NFVGRSFAMT SQLAPQNNVG SLSSSSDESL  180
VSQNIINSPI ENQPNNVRGN STANIPPPLL PPPPPPPPFE ENEEIRVDRE KSIIFGTVIT  240
ATDEIVELFQ MNEPIWIKSQ IDGRYFINRE SYEKIYPKPN QAYKSAARIE SSKESGVVTM  300
TAIELIQIFL DPVRYMNMFP TIVTKARTIE VVDTENFGGS VQLMYEKLHI LSPLVGARDF  360
FFIRCCRQLD PTTWTMVDVS FDNLREIQSG GPSQSWKFPS GCVIQDLGNG KSMVTWLEHV  420
HVDDKTHTNR LYRDLVCGRQ TFGAKRWIIT LQRMSERHNF AMNANNHDFG GVLGAPEGKQ  480
NVMQISQRMV KSFCEILSMG DRLDFPTSSE MTNSGVRVSF RKNEDMSQPK GLIVTAATSL  540
WLPLSFDTVF NFFKDDKTRT QWDVLTNGNA VGELARIPTG YFPGNCISII QPYVSKENNM  600
LLLQETNIDP MGAFIIYAPI DLPAVTSIIN GADTTQIPIL PSGFIISPDG RLAADRDSNG  660
ISQTGSLLTV AFQILVSANN NNNSISKQQN MEAVATVHTL LSSTVQKIKV ALDCTD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771801.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1U7W3L10.0A0A1U7W3L1_NICSY; homeobox-leucine zipper protein ROC8-like
STRINGXP_009771801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11