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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009771680.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 263aa MW: 30322.3 Da PI: 5.5931 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 24.4 | 5.4e-08 | 144 | 189 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+++ r+RR++i ++ +eL +l+P +++ ae+L+ + +Y+k Lq
XP_009771680.1 144 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATFKYVKFLQ 189
67889*******************955......9*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:4.10.280.10 | 4.4E-12 | 136 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.79E-12 | 136 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.11E-10 | 137 | 192 | No hit | No description |
| PROSITE profile | PS50888 | 12.862 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.6E-5 | 144 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.9E-9 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 263 aa Download sequence Send to blast |
MASLSYNSNS NLEPNMQQLN EFLFDFNYDQ SFPKPEACYF DPFFDSSDFV FPAILMEPNC 60 IVPEIQEYYS DFQMSNPKRQ KVFQLDNCHH QDIITHEGNL SNGPIYQSFS FPENIPMPQL 120 EFPSPPVFNS GCCHEKKEKK MSAQSIAARQ RRKKITEKTQ ELGKLIPGGH RMNTAEMLQA 180 TFKYVKFLQA QVGLLEFIGS HQQENGKSYE TPDLQKLVGS PLIQEKLYSS DNCLVPKVFL 240 EDLDKNHEFQ HSQSVDQVKK LIT |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009771680.1 | 0.0 | PREDICTED: transcription factor bHLH53 isoform X1 | ||||
| TrEMBL | A0A1U7WBS7 | 0.0 | A0A1U7WBS7_NICSY; transcription factor bHLH53 isoform X1 | ||||
| STRING | XP_009771680.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3856 | 22 | 46 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G30670.1 | 1e-25 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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