PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771679.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 617aa    MW: 68377 Da    PI: 5.9585
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.33.5e-23203256155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH++F+ea++ + G +k +Pk+il+ mkv+gLt+e+v+SHLQkYR+
  XP_009771679.1 203 KAKVVWTSSLHNKFLEAIRDI-GFDKVVPKKILDQMKVPGLTRENVASHLQKYRI 256
                     6799*****************.********************************6 PP
2Response_reg71.14.4e-24131211109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + +++++ +l+k +y +v +++++ +al +l+ k   +Dl+++D+ mp+m+G+el + i+ e  +lp+++++a ++e ++l+ l+ G
  XP_009771679.1  13 ILVVDDDVVCLSIVAMILKKCKY-QVMTVKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITDEF-ELPVVLMSADDKEGTILKGLDGG 105
                     89*********************.***************666666**********************9999.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  fl+Kp++ ++l++
  XP_009771679.1 106 AAFFLVKPISVDDLRD 121
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.1E-3210134No hitNo description
SuperFamilySSF521721.29E-2910127IPR011006CheY-like superfamily
SMARTSM004482.5E-2411123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.75112127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2013121IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.47E-2214124No hitNo description
PROSITE profilePS512949.66200259IPR017930Myb domain
SuperFamilySSF466894.3E-17201260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-23202260IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23203256IPR006447Myb domain, plants
PfamPF002497.2E-6206255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MEVETLINKS ISILVVDDDV VCLSIVAMIL KKCKYQVMTV KHPMDALSIL RIKGGSFDLV  60
VVDVHMPDMN GFELQQVITD EFELPVVLMS ADDKEGTILK GLDGGAAFFL VKPISVDDLR  120
DLWQYTLLQK KKGKRVVLEE INCLEKSSNC NKKSLHEVGE SASSINENYY QHIKKEKSKR  180
KPARTQRNAD KDNSGNSAAL FKKAKVVWTS SLHNKFLEAI RDIGFDKVVP KKILDQMKVP  240
GLTRENVASH LQKYRIFLER VSDACCRIQA ADTNLAIKAV QSTFASGMLS QEKIGLQKQF  300
SENTTNPRSL IHTANNGSSS FRTQQTRQAI PLGYEQAQLF LNEGILGNIT HSNEIPLYKA  360
NQLTSTMKAN NYQTGTSAYE DISSQLMNGT TSTQVRRMLS RVPANRLSDR NLLALGTNGI  420
TKHATLNGNL NFLHDGFADD QCGTNFTQNN DADEASTLFA GLMNFIGKSQ HDSEQCLAQE  480
ASSSVGFDGE KQCSAILSDH IDEDTSMQLP SFVNDVCRGQ EVDATLNPVC NFSEFHNINA  540
TQQSRGIGDL SVPFVNQGNV QPHQQQEHIG HSEPAEDGMS QLHNVFSYPT EQCKNEQFLE  600
LVLASSPYEG DQNPDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18202262464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494882e-36AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771679.10.0PREDICTED: putative two-component response regulator ARR21 isoform X2
TrEMBLA0A1U7WAJ50.0A0A1U7WAJ5_NICSY; putative two-component response regulator ARR21 isoform X2
STRINGXP_009771678.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-51response regulator 2