PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771670.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 181aa    MW: 20711.6 Da    PI: 9.4135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18755254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  XP_009771670.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.56E-36666No hitNo description
Gene3DG3DSA:3.30.730.102.3E-34764IPR001471AP2/ERF domain
PROSITE profilePS5103221.101764IPR001471AP2/ERF domain
PfamPF008472.5E-11756IPR001471AP2/ERF domain
SMARTSM003809.1E-40770IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-21766IPR016177DNA-binding domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGQRAR  60
TNFPYNPNMP QTSSSKILSA NLTAKLHKCY MASLQMAKTS AQQHKIQASH VNVPKNTPIQ  120
ENVAYEKRKQ QMVAPKPSLL THDVESIPQV VKPLEDDHIE QMIEELLDYG SIELCSNVTS  180
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-18868667ATERF1
3gcc_A7e-18868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0776261e-104AY077626.1 Lycopersicon esculentum ethylene response factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771670.11e-135PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016497010.11e-135PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-75ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4C7981e-134A0A1S4C798_TOBAC; ethylene-responsive transcription factor ERF003-like
TrEMBLA0A1U7WBR61e-134A0A1U7WBR6_NICSY; ethylene-responsive transcription factor ERF003-like
STRINGXP_009771670.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-66ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]